New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1619328 =	68 (0.980)	46 (0.670)	32/272	1.0	42.2%	coding (209/435 nt)	marR	DNA‑binding transcriptional repressor MarR
	?	NC_000913	= 1619446	59 (0.860)					coding (327/435 nt)	marR	DNA‑binding transcriptional repressor MarR

GGCCAACTAATTGATGGCATTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1619468‑1619328 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGACCGACAA  <  NC_000913/1619446‑1619309                                                                                                                                                                                                                                                                                         GGCCAACTAATTGATGGCATTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGT                                                                                                                                             >  2:942818/1‑140   CCAACTAATTGATGGCATTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGT                                                                                                                                           <  1:942818/140‑1                  CATTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCG                                                                                                                            <  1:490938/140‑1                   ATTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTACACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGC                                                                                                                           >  2:25058/1‑140                    TTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGC                                                                                                                             <  1:746803/137‑1                    TTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGC                                                                                                                             >  2:746803/1‑137                    TTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCCGGTTCGGCAAACTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCC                                                                                                                          >  2:214257/1‑140                            ATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGG                                                                                                                  <  1:214257/140‑1                              ATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGG                                                                                                                  >  1:754077/1‑138                              ATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGG                                                                                                                  <  2:754077/138‑1                                TGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGCCCCGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAG                                                                                                              >  2:150070/1‑140                                 GCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGT                                                                                                             <  1:1141422/140‑1                                 GCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGT                                                                                                             <  1:25058/140‑1                                                       TTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGT                                                                                       <  1:150070/140‑1                                                                   CGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCG                                                                           >  1:852838/1‑140                                                                          GTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGCTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCT                                                                    >  1:449124/1‑140                                                                           TCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTT                                                                   <  2:852838/140‑1                                                                                  GGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTTCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCC                                                            >  2:743029/1‑140                                                                                    gTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAG                                                          <  1:772332/139‑1                                                                                                TCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACC                                              >  2:772332/1‑140                                                                                                   ttaCAGCCTTTACAGGCCAGGGGATCCAGCATTCGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGG                                           <  1:1108018/137‑1                                                                                                      CAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGA                                        <  1:743029/140‑1                                                                                                       AGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGG                                           >  1:415819/1‑136                                                                                                       AGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTGCGGCAACCTTTCCACCCAGCCTTTACAGACCAGG                                           <  2:415819/136‑1                                                                                                              ACAGACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCAT                                >  2:190145/1‑140                                                                                                               CAGGCCAGGCGATCCAGCATTCGGGGCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATA                               <  2:591519/140‑1                                                                                                                  ACCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGG                            >  2:641481/1‑140                                                                                                                   CCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGG                           >  1:630997/1‑140                                                                                                                   CCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGG                           >  1:488130/1‑140                                                                                                                   CCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCAT                                <  1:142852/135‑1                                                                                                                   CCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCAT                                >  2:142852/1‑135                                                                                                                   CCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGGTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCACACGGG                           >  1:988211/1‑140                                                                                                                   CCAGGCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCCGTGGTAAGTTTTACCAGGAGGCCGCGCTTGTCATACGGGCTCGGCAACCTTTCCACCAAGACTTTAGAGACCAGGCGATCCAGCATACGGG                           >  2:29966/1‑140                                                                                                                       GCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGTTTGTCATTCGGGTACGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAG                       <  2:488130/140‑1                                                                                                                       GCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAG                       >  1:803497/1‑140                                                                                                                       GCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAG                       >  2:1142440/1‑140                                                                                                                       GCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAG                       >  2:757582/1‑140                                                                                                                       GCGATCCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAG                       >  1:175227/1‑140                                                                                                                            CCAGCATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTC                  >  1:353833/1‑140                                                                                                                                CATACGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAG              >  2:598986/1‑140                                                                                                                                    CGGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCG          <  1:190145/140‑1                                                                                                                                     GGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGA         >  2:728216/1‑140                                                                                                                                     GGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGA         >  2:1035079/1‑140                                                                                                                                     GGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAG                       <  2:606164/126‑1                                                                                                                                     GGGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAG                       >  1:606164/1‑126                                                                                                                                      GGTCAGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGAC        >  1:105846/1‑140                                                                                                                                          AGTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGACCGAC    >  2:749036/1‑140                                                                                                                                            TGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGACCGACAA  >  2:474487/1‑140                                                                                                                                                                                                                                                                                         GGCCAACTAATTGATGGCATTGTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1619468‑1619328 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgTTCACATATTGCCGCGCCGCCGGTGGTAAGTTTTACCAGTACGCCGCGCTTGTCATTCGGGTTCGGCAACCTTTCCACCCAGCCTTTACAGACCAGGCGATCCAGCATACGGGTCAGTGCTCCCAGGTCGACCGACAA  <  NC_000913/1619446‑1619309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.