| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC | NC_000913 | 2,173,362 | Δ3 bp | pseudogene (915‑917/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2173361 | 3 (0.050) | 50 (0.800) | 40/274 | 0.4 | 92.6% | pseudogene (918/1358 nt) | gatC | galactitol‑specific PTS enzyme IIC component |
| ? | NC_000913 | 2173365 = | 5 (0.080) | pseudogene (914/1358 nt) | gatC | galactitol‑specific PTS enzyme IIC component | |||||
ACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTA > NC_000913/2173234‑2173503 | gcacggcgtccgccatcgccacgaagaagccgatggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGt < 1:19681‑M2/9‑1 (MQ=255) ccgccatcgccacgaagaagccgatggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCagcagc < 2:915645‑M2/18‑1 (MQ=255) ccgccatcgccacgaagaagccgatggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCagcagc > 2:678091‑M2/123‑140 (MQ=255) ccgccatcgccacgaagaagccgatggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCagcagc < 2:186243‑M2/18‑1 (MQ=255) ccgccatcgccacgaagaagccgatggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCagcagc > 1:186243‑M2/123‑140 (MQ=255) ccgccatcgccacgaagaagccgatggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCagcagc > 1:946569‑M2/123‑140 (MQ=255) gccatcgccacgaagaagccgatggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCaa > 2:115492‑M2/121‑140 (MQ=255) aTCGCCAAGATGAACCCGATGGTGGAAAAATCGCCAAACGGCAGCCCCTGATTACCCGGCACACAAACGGCAATTAAAATGGTGAGCGGGATAAAAACCAGGCTTGCCGATCCCA‑‑CCGCCGTATGTCCCAGCAGCCACGc < 2:101279/140‑1 (MQ=255) atcgccacgaagaagccgatggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGc > 1:101279‑M2/118‑140 (MQ=255) tcgccacgaagaagccgatggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGcc < 1:304388‑M2/24‑1 (MQ=255) cacgaagaagccgatggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGAt < 2:152494‑M2/28‑1 (MQ=255) agaagccgatggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCaa > 1:791986‑M2/108‑138 (MQ=255) agaagccgatggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCaa < 2:791986‑M2/31‑1 (MQ=255) gccgatggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCaa < 2:887498‑M2/37‑1 (MQ=255) gccgatggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCaa < 1:678091‑M2/37‑1 (MQ=255) gtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGaa < 1:670042‑M2/44‑1 (MQ=255) ggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccacGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATc < 2:587780‑M2/39‑1 (MQ=255) ggtggcaagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccacGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATc > 1:587780‑M2/97‑135 (MQ=255) aagatcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCt < 1:115492‑M2/49‑1 (MQ=255) atcgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAc > 1:917611‑M2/89‑140 (MQ=255) cgccaaacggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccg > 2:496078‑M2/87‑140 (MQ=255) gcaaaacggcagcacctgattccccggcacacaaacagcaataaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGAccgc < 2:146751‑M2/55‑1 (MQ=255) cggcagcacctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACt > 2:402552‑M2/80‑140 (MQ=255) acctgattacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTg < 1:271681‑M2/68‑1 (MQ=255) attccccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAAc < 2:559608‑M2/73‑1 (MQ=255) attacccggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAAc < 2:917611‑M2/73‑1 (MQ=255) acagcacacaaacagcaataaaaatggtgagtggaataaaaatcaggcttgccgatcccaccGCCGTATGTCCCAGCAACAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTa < 2:120514‑M2/78‑1 (MQ=255) ggcacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACg > 1:1007450‑M2/61‑140 (MQ=255) cacacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGT‑CCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc > 1:948444‑M2/59‑140 (MQ=255) acacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc > 2:441692‑M2/58‑140 (MQ=255) acacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 1:109559‑M2/83‑1 (MQ=255) acacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc < 1:620142‑M2/83‑1 (MQ=255) acacaaacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGc > 2:277453‑M2/58‑140 (MQ=255) aacagcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCt > 1:392268‑M2/53‑140 (MQ=255) gcaattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGc > 1:594663‑M2/49‑140 (MQ=255) caattaaaatggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAACAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCctgcttctgt > 1:120514‑M2/48‑136 (MQ=255) ggtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTa > 2:37986‑M2/38‑140 (MQ=255) ggAGTGGAAAAAAAATCAGGCTTGCCGAT‑CC‑CCCCGCCGTATGTCCCAGCAGCAACGCCGAATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaaa < 2:456599/139‑1 (MQ=255) gtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaa > 1:926395‑M2/37‑140 (MQ=255) gtgagtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGAATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTaa > 1:456599‑M2/37‑140 (MQ=255) agtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcc > 2:371590‑M2/34‑140 (MQ=255) agtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcc < 1:37986‑M2/107‑1 (MQ=255) gtgggataaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAcca < 1:402552‑M2/108‑1 (MQ=255) ggaataaaaaccgggcttgccgatcccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAAccatc < 1:782814‑M2/110‑1 (MQ=255) aaaaatcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCatga < 1:371590‑M2/115‑1 (MQ=255) accaggcttgccgatcccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATggg < 2:360806‑M2/119‑1 (MQ=255) tcaggcttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGt < 1:277453‑M2/120‑1 (MQ=255) cttgccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAAt < 2:1007450‑M2/125‑1 (MQ=255) gccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAc > 1:55003‑M2/13‑140 (MQ=255) gccgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAc > 2:905842‑M2/13‑140 (MQ=255) ggataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTACTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAccc < 2:822270‑M2/130‑1 (MQ=255) cgataccaccGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAccc < 1:496078‑M2/130‑1 (MQ=255) ccgccgTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAc > 2:90579/1‑130 (MQ=255) ccgccgTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCAc < 1:90579/130‑1 (MQ=255) ccgccgTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTTGCAtt > 1:699344/1‑140 (MQ=255) cGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTa > 2:124167‑M2/2‑140 (MQ=255) cGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTa > 2:897699‑M2/2‑140 (MQ=255) | ACGGCGACCGCCATCGCCACGAAGAAGCCGATGGTGGCAAGATCGCCAAACGGCAGCACCTGATTACCCGGCACACAAACAGCAATTAAAATGGTGAGTGGGATAAAAATCAGGCTTGCCGATACCACCCCGCCGTATGTCCCAGCAGCAACGCCGGATCAAGGCCAATCAGGAACTCCTGACCGCCGAACTTCGCCTGTAAACGACTACGAGCCTGCTTAGCGATGGGCGTTAAACCATCCATGATGGGTTTAATCACCCGTGGCATTA > NC_000913/2173234‑2173503 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |