Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,560,455	+G	pseudogene (151/758 nt)	glpR ←	DNA‑binding transcriptional repressor GlpR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,560,455	1	.	G	100.0%	315.4 / NA	82	pseudogene (151/758 nt)	glpR	DNA‑binding transcriptional repressor GlpR
Reads supporting (aligned to +/- strand):  ref base . (0/0);  new base G (43/39);  total (43/39)

ATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑C‑CAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTT  >  NC_000913/3560317‑3560584                                                                                                                                             |                                                                                                                                    aaaaaCGGGGTCGAGCCTTGGGGGTTTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑cg                                                                                                                                     <  2:1020775/138‑2 (MQ=255) aTAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑cg                                                                                                                                     >  1:1006992/1‑139 (MQ=255) aTAAACAGCGTCGAGCCATGGGGGTTTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑cg                                                                                                                                     <  2:328449/140‑2 (MQ=255)     aCAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑cgcagg                                                                                                                                 >  1:980766/1‑135 (MQ=255)      cAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGa                                                                                                                                >  2:897696/1‑140 (MQ=255)        gCGTCGGGCCATGGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATc                                                                                                                              <  2:191370/140‑1 (MQ=255)        gCGTCGAGCTGTTGGGGATTTGCGCCGCCGCTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATc                                                                                                                              <  2:447176/140‑1 (MQ=255)        gCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATc                                                                                                                              >  2:185205/1‑140 (MQ=255)        gCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATc                                                                                                                              <  1:539534/140‑1 (MQ=255)         cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGa                                                                                                                                <  1:479507/137‑1 (MQ=255)         cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGa                                                                                                                                >  2:479507/1‑137 (MQ=255)         cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCa                                                                                                                             >  1:1014740/1‑140 (MQ=255)         cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCa                                                                                                                             >  2:213805/1‑140 (MQ=255)         cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCa                                                                                                                             >  1:538710/1‑140 (MQ=255)         cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCa                                                                                                                             >  1:447176/1‑140 (MQ=255)         cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCa                                                                                                                             >  2:838282/1‑140 (MQ=255)          gTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑g                                                                                                                           >  1:156928/1‑140 (MQ=255)              aGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGCTGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGttt                                                                                                                       >  1:812266/1‑140 (MQ=255)                ccATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTg                                                                                                                     <  2:924176/140‑1 (MQ=255)                   ttGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTc                                                                                                                  >  2:1017458/1‑140 (MQ=255)                     ggggATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCg                                                                                                                >  2:869042/1‑140 (MQ=255)                     ggggATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCg                                                                                                                <  1:185205/140‑1 (MQ=255)                       ggATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGcc                                                                                                              <  1:209614/140‑1 (MQ=255)                             gCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCa                                                                                                        >  1:871304/1‑140 (MQ=255)                                 cGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGa                                                                                                    >  1:198719/1‑140 (MQ=255)                                  gCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAg                                                                                                   >  2:1044109/1‑140 (MQ=255)                                  gCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAg                                                                                                   >  2:442223/1‑140 (MQ=255)                                     aCTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTc                                                                                                <  2:295127/140‑1 (MQ=255)                                         tGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCgcgg                                                                                            >  1:709528/1‑140 (MQ=255)                                             ggCGATGCGCTCTTTTTCTTCGTTCTGGGTGGCCTAGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGt                                                                                                 <  1:284751/131‑1 (MQ=255)                                             ggCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGt                                                                                                 >  2:284751/1‑131 (MQ=255)                                             ggCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGaa                                                                                        <  1:442223/140‑1 (MQ=255)                                              gCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAAt                                                                                       >  2:756634/1‑140 (MQ=255)                                              caaaTGCGCTCTTTTTCTGGGGTCGGGGTAGCTTTGCGGGCGTCCCAGGGCGTGTAAGCCAATTTAGAAGGCGGTGCGCTACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAAt                                                                                       <  2:812266/137‑1 (MQ=255)                                                 aTGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGt                                                                                    >  2:893411/1‑140 (MQ=255)                                                        ctTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCggg                                                                             >  1:5444/1‑140 (MQ=255)                                                                  ggTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGgaga                                                                  <  2:1014740/140‑1 (MQ=255)                                                                   gTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGaa                                                                 >  1:527310/1‑140 (MQ=255)                                                                   gTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGaa                                                                 >  1:349176/1‑140 (MQ=255)                                                                   gTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGaa                                                                 >  2:137128/1‑140 (MQ=255)                                                                   gTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGaa                                                                 >  1:754495/1‑140 (MQ=255)                                                                   gTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGaa                                                                 >  1:45911/1‑140 (MQ=255)                                                                     cTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAAt                                                               <  1:66416/140‑1 (MQ=255)                                                                      tGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGAGGCGAATAGTCTGCGGGC‑TGACGGAGAAATg                                                              <  2:1030630/140‑1 (MQ=255)                                                                       gggTGGCCTTGCGATCGTGCCACGGGGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGc                                                             <  1:801136/140‑1 (MQ=255)                                                                       gggTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGc                                                             <  2:1016517/140‑1 (MQ=255)                                                                             ccTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTAcc                                                       >  1:341815/1‑140 (MQ=255)                                                                              cTTGCGATCGTGCCACGGCGTGTTAACCGAACT‑GAAAGCCGCCCCGCCCCGCCCTGAAGGCC‑CCGGGTCAGGGTTTTGC‑CCGCCCGCTCCTTTAGGGCGCGGGGAAAAGGCTGGGGGCTTGACGG‑GGAATGCTCTaaccg                                                     >  2:153552/1‑136 (MQ=255)                                                                               ttGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAg                                                     <  1:869042/140‑1 (MQ=255)                                                                                  cGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGctc                                                  >  2:776508/1‑140 (MQ=255)                                                                                  cGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGctc                                                  >  2:23985/1‑140 (MQ=255)                                                                                    aTCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCtt                                                <  2:5444/140‑1 (MQ=255)                                                                                    aTCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCtt                                                <  1:897696/140‑1 (MQ=255)                                                                                    aTCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCtt                                                <  1:137128/140‑1 (MQ=255)                                                                                          ccACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTAc                                          <  1:776508/140‑1 (MQ=255)                                                                                               gCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACa                                     >  2:314570/1‑140 (MQ=255)                                                                                               gCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACa                                     <  1:838282/140‑1 (MQ=255)                                                                                                  tgtTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATaa                                  >  1:50549/1‑140 (MQ=255)                                                                                                      acccGAAGTGGAAGGCTGCGCCGCTCCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct                              <  1:660204/138‑1 (MQ=255)                                                                                                      aaCCGAACTGGAGGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct                              <  2:527310/140‑1 (MQ=255)                                                                                                      aaCCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct                              <  2:754495/140‑1 (MQ=255)                                                                                                      aaCCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct                              <  1:213805/140‑1 (MQ=255)                                                                                                       aCCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCctg                             <  2:709528/140‑1 (MQ=255)                                                                                                        ccGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCctgc                            >  2:1138749/1‑140 (MQ=255)                                                                                                         cGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCctgct                           >  2:815040/1‑140 (MQ=255)                                                                                                            aCTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct                              >  2:977545/1‑134 (MQ=255)                                                                                                            aCTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct                              <  1:977545/134‑1 (MQ=255)                                                                                                            aCTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGtt                        >  1:163725/1‑140 (MQ=255)                                                                                                            aCTGGAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGtt                        >  2:521598/1‑140 (MQ=255)                                                                                                                gAAGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAAc                    <  1:756634/140‑1 (MQ=255)                                                                                                                  aGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCa                  >  1:49663/1‑140 (MQ=255)                                                                                                                  aGGCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCa                  >  1:38077/1‑140 (MQ=255)                                                                                                                   ggCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                 <  1:1017458/140‑1 (MQ=255)                                                                                                                   ggCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                 <  1:23985/140‑1 (MQ=255)                                                                                                                   ggCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                 <  2:980766/140‑1 (MQ=255)                                                                                                                   ggCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                 <  2:49663/140‑1 (MQ=255)                                                                                                                   ggCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                 <  2:38077/140‑1 (MQ=255)                                                                                                                    gCAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGt                <  2:163725/140‑1 (MQ=255)                                                                                                                     cAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt               >  1:543278/1‑140 (MQ=255)                                                                                                                     cAGCGCCGCACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt               <  1:893411/140‑1 (MQ=255)                                                                                                                        cgccgcACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct                              >  1:21450/1‑122 (MQ=255)                                                                                                                        cgccgcACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct                              <  2:21450/122‑1 (MQ=255)                                                                                                                        cgccgcACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                 <  1:1068297/135‑1 (MQ=255)                                                                                                                        cgccgcACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                 >  2:1068297/1‑135 (MQ=255)                                                                                                                        cgccgcACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGa            >  1:802850/1‑140 (MQ=255)                                                                                                                        cgccgcACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGATACTGACATAACCCTGCTGTTTAACCAGTTCGa            >  2:707692/1‑140 (MQ=255)                                                                                                                          ccgcACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCggtt          >  1:282085/1‑137 (MQ=255)                                                                                                                             cACCGCCATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGataata       <  1:314570/140‑1 (MQ=255)                                                                                                                                  ccATGATGG‑CGCAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGtt  <  1:815040/140‑1 (MQ=255)                                                                                                                                             |                                                                                                                                    ATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGTGGCCTTGCGATCGTGCCACGGCGTGTTAACCGAACTGGAAGGCAGCGCCGCACCGCCATGATGG‑C‑CAGGATCA‑GGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGC‑TGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTT  >  NC_000913/3560317‑3560584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑