New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	337285 =	59 (0.810)	3 (0.040)	3/274	7.1	5.2%	coding (508/1548 nt)	yahF	putative acyl‑CoA synthetase YahF
	?	NC_000913	= 337474	51 (0.710)					coding (697/1548 nt)	yahF	putative acyl‑CoA synthetase YahF
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCGTCGCGGCAACATCGGTATTGTTGGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGCCTGCGCCTGCGGTGGCCCGCAAAGTGCTGGAACGTGCGCGCGCCTGCCGCAAGCCGGTGG  >  NC_000913/337337‑337612                                                                                                                                          |                                                                                                                                            tGCGTCGCGGCAACATCGGTATTGTTGGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCggcggc                                                                                                                                           >  1:144910/1‑140 (MQ=255) tGCGTCGCGGCAACATCGGTATTGTTGGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCggcggc                                                                                                                                           <  1:995802/140‑1 (MQ=255) tGCGTCGCGGCAACATCGGTATTGTTGGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGAGCGAACTGAGAGAGAAAATCggcggc                                                                                                                                           >  1:725285/1‑140 (MQ=255)  gCGTCGCGGCAACATCGGTATTGTTGGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGcc                                                                                                                                          >  2:1101039/1‑140 (MQ=255)      cgcgGCAACATCGGTATTGTTGGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCACGACCTCAGCGAGGAAAACCGGGGCCcgaa                                                                                                                                      >  2:930233/1‑139 (MQ=255)       gcgGCAACATCGGTATTGTTGGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAAACGGCGGGCtggtg                                                                                                                                     >  2:749994/1‑140 (MQ=255)        cgGCAACATCGGTATTGTTGGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCtgatga                                                                                                                                    >  1:333934/1‑140 (MQ=255)               aTCGGTATTGTTGGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGa                                                                                                                             <  2:346370/140‑1 (MQ=255)                 cGGTATTGTTGGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACg                                                                                                                           <  2:333934/140‑1 (MQ=255)                        gttgGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCgg                                                                                                                    >  1:530888/1‑140 (MQ=255)                        gttgGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCCGATGATGCTCGGCGCCATCgg                                                                                                                    >  2:985830/1‑140 (MQ=255)                         ttgGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCggg                                                                                                                   >  1:220968/1‑140 (MQ=255)                         ttgGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCg                                                                                                                     >  1:970950/1‑138 (MQ=255)                         ttgGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCg                                                                                                                     <  2:970950/138‑1 (MQ=255)                          tgGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGa                                                                                                                  <  2:220968/140‑1 (MQ=255)                           ggCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGGGGGGGAAAAACGGCGGCCCGATGATTCGCGACGCCCTCcgggg                                                                                                                 >  2:1165386/1‑138 (MQ=255)                           ggCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGAt                                                                                                                 >  1:133263/1‑140 (MQ=255)                                aTCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGTCTGATGATGCTCGACGCCATCGGGATGCTgg                                                                                                            <  2:536059/140‑1 (MQ=255)                                 tCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGa                                                                                                           <  2:133263/140‑1 (MQ=255)                                       gagacaggTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGa                                                                                                     <  1:289686/133‑1 (MQ=255)                                          ggcaGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑cc                                                                                                 >  1:1209582/1‑140 (MQ=255)                                            agacagggAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGc                                                                                               <  1:615141/134‑1 (MQ=255)                                             aGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCa                                                                                              <  1:28354/140‑1 (MQ=255)                                              gTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCaa                                                                                             <  1:851847/140‑1 (MQ=255)                                                    aGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCCGAGCGAGAAAAACGGGGGGCCGATGATGGTCGCCGCCATCGGGGAGCTGGGAAACGAA‑CCGCcaaattaa                                                                                       >  2:880053/1‑135 (MQ=255)                                                      ttGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAAt                                                                                     <  1:880053/140‑1 (MQ=255)                                                        gAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCa                                                                                   <  2:144910/140‑1 (MQ=255)                                                        gAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCa                                                                                   <  2:1209582/140‑1 (MQ=255)                                                         aGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCAt                                                                                  >  1:385097/1‑140 (MQ=255)                                                         aGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGAACTGAGGGCGAAAAACCGCGGGCCGGTGATTCTCCCCGCCCGCGGGATGCTGGGAAAAGATCCCGCAACATGaaacat                                                                                   >  2:423432/1‑137 (MQ=255)                                                         aGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGAACTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCaa                                                                                  >  1:413963/1‑139 (MQ=255)                                                             tCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAAAAGGCGGGCTTATGGTGCTCGACGCCATCGGGGTGCTGGGAAAAGAT‑TCGCAAAATGAAAACaattcg                                                                              >  2:600712/1‑135 (MQ=255)                                                               cGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCt                                                                            <  1:606659/140‑1 (MQ=255)                                                               cGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCACGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCt                                                                            <  1:930233/140‑1 (MQ=255)                                                                gCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCtt                                                                           <  2:385097/140‑1 (MQ=255)                                                                              ggcggcggcGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACcgcc                                                             <  2:884561/140‑1 (MQ=255)                                                                               gcggcggcgTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACcgcct                                                            <  2:277794/140‑1 (MQ=255)                                                                                 ggcggcgTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACcgcctgc                                                          <  1:189257/140‑1 (MQ=255)                                                                                  gcggcgTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACcgcctgcg                                                         >  1:207724/1‑140 (MQ=255)                                                                                        tttCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGcctgcgcctgcg                                                   <  1:749994/140‑1 (MQ=255)                                                                                                cTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGcctgcgcctgcg                                                   >  1:870474/1‑132 (MQ=255)                                                                                                cTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGcctgcgcctgcg                                                   <  2:870474/132‑1 (MQ=255)                                                                                                  ggttGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGCCTGCGCCTGCGGTGGCCCGCa                                         <  2:725285/138‑1 (MQ=255)                                                                                                  gATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGCCTGCGCCTGCGGTGGCCCGCa                                         <  1:600712/140‑1 (MQ=255)                                                                                                  gATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGCCTGCGCCTGCGGTGGCCCGCa                                         <  1:797736/140‑1 (MQ=255)                                                                                                  gATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGCCTGCGCCTGCGGTGGCCCGCa                                         <  1:1101039/140‑1 (MQ=255)                                                                                                    ttGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGCCTGCGCCTGCGGTGGCCCGCaaa                                       <  1:170224/140‑1 (MQ=255)                                                                                                                    cgACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGCCTGCGCCTGCGGTGGCCCGCAAAGTGCTGGAACGTgcgc                       <  1:1076005/140‑1 (MQ=255)                                                                                                                            gCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGCCTGCGCCTGCGGTGGCCCGCAAAGTGCTGGAACGTGCGCGCGCCTGc               >  2:882799/1‑140 (MQ=255)                                                                                                                               agaAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGCCTGCGCCTGCGGTGGCCCGCAAAGTGCTGGAACGTGCGCGCGCCTGCCGc            >  2:469855/1‑140 (MQ=255)                                                                                                                                     tCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGCCTGCGCCTGCGGTGGCCCGCAAAGTGCTGGAACGTGCGCGCGCCTGCCGCAAGCCg      >  2:1181170/1‑140 (MQ=255)                                                                                                                                         cggcCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGCCTGCGCCTGCGGTGGCCCGCAAAGTGCTGGAACGTGCGCGCGCCTGCCGCAAGCCggtgg  >  1:337384/1‑140 (MQ=255)                                                                                                                                          |                                                                                                                                            TGCGTCGCGGCAACATCGGTATTGTTGGCGCATCCGGCACCGGCAGTCAGGAGTTGAGCGTCCGCATTCATGAATTTGGCGGCGGCGTTTCGCAACTGATTGGCACCGGCGGGCGCGACCTGAGCGAGAAAATCGGCGGCCTGATGATGCTCGACGCCATCGGGATGCTGGAAAACGAT‑CCGCAAACTGAAATCATTGCGCTTATCTCCAAACCGCCTGCGCCTGCGGTGGCCCGCAAAGTGCTGGAACGTGCGCGCGCCTGCCGCAAGCCGGTGG  >  NC_000913/337337‑337612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.