| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 646,747 | 0 | T | G | 20.8% | 172.4 / 26.2 | 77 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| Reads supporting (aligned to +/- strand): ref base T (3/58); new base G (16/0); total (19/58) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.09e-14 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TTTATCAAGTGCTTAAATAATTAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCAAGGTATCGAGCAATGCCAGTTC > NC_000913/646611‑646885 | tttATCAAGTGCTTAAATAATTAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCg > 2:686341/1‑140 (MQ=255) aTCAAGTGCTTAAATAATTAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑At > 1:902008/1‑140 (MQ=255) gTGCTTAAATAATTAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGcccc < 1:1648148/140‑1 (MQ=255) gCTTAAATAATTAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGG‑ATGcccccc > 2:294147/1‑139 (MQ=255) cTTAAATAATTAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCtt > 1:75141/1‑140 (MQ=255) ttAAATAATTAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCttt < 1:208631/140‑1 (MQ=255) ttAAATAATTAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCttt < 2:902008/140‑1 (MQ=255) ttAAATAATTAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCttt < 2:2127835/140‑1 (MQ=255) ttAAATAATTAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCttt < 1:942326/140‑1 (MQ=255) aaaTAATTAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGG‑ATGCCCCCctttt > 2:46834/1‑140 (MQ=255) ataatTAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTTTA‑ATGGCCCCttttttg > 1:419824/1‑138 (MQ=255) atTAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGA‑ATGGCCCCCTTTTTCaaa > 2:1246894/1‑139 (MQ=255) ttAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGG‑ATGCCCCCCTTTTTCaata > 2:1624960/1‑140 (MQ=255) tAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTTGG‑ATGGCCCCCTTTTTCtataa > 2:951849/1‑140 (MQ=255) gtgCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTTGA‑ATGCCCCCCTTTTTTCATAATtttttt > 2:24302/1‑138 (MQ=255) tgCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCaat < 2:1636827/130‑1 (MQ=255) tgCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTTGG‑ATGTCCCCCTTTTTCAAAAATtttttcc > 1:1761039/1‑137 (MQ=255) tgCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGG‑ATGCCCCCCTTTTTTCATAATttttttg > 2:41112/1‑137 (MQ=255) tgCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGA‑ATGCCCCCCTTTTTCaat > 1:1636827/1‑130 (MQ=255) gCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTTGG‑ATGCCCCCCTTTTGTCATAATGtttttgc > 2:786473/1‑136 (MQ=255) gCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTAGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTTGG‑ATGCCCCCCTTTTTTAATAATAttttttc > 2:1404994/1‑136 (MQ=255) aaaaaCCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTc < 2:999578/140‑1 (MQ=255) aaaaaCCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTc < 2:1892785/140‑1 (MQ=255) aaaaaCCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTc < 2:2044476/140‑1 (MQ=255) aaaaaCCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTc < 2:281324/140‑1 (MQ=255) aaaaaCCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTc < 1:738944/140‑1 (MQ=255) aaaaaCCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTc < 2:75141/140‑1 (MQ=255) aaaaaCCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTc < 2:856951/140‑1 (MQ=255) cAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTGGG‑ATGCCCCCCTTTTTTAATAATATTTTTGCCTCgcgccg > 2:832321/1‑138 (MQ=255) cAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTAGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGG‑AAGCCCCCCTTTTTTAATAATTTTTGCGCCCCCCGCTg > 2:1375708/1‑140 (MQ=255) tAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGc < 1:1647523/140‑1 (MQ=255) aTCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAgcg < 1:151982/140‑1 (MQ=255) aTCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTTGA‑ATGCCCCCCTTTTTCAATAAAGTTTTCGCCCCCCCCCGTAGCCAgcg > 1:483933/1‑140 (MQ=255) aGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGA‑ATGCCCCCCTTTTTTAATAATGTTTTCGCCTCCCGCCGTAGCCCGCGCAg > 2:1763431/1‑140 (MQ=255) gTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAgg < 1:951849/140‑1 (MQ=255) gTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTTGA‑ATGCCCCCCTTTTTTAATAATGTTTTTGCCTCCCCCCGTAGCCCGCGCAgg > 2:1705735/1‑140 (MQ=255) gTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGG‑ATGCCCCCCTTTTTTAATAATTTTTTTGCCCCGCCCCGTAGCCCGCGCCgg > 2:32448/1‑140 (MQ=255) aGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGcc < 1:1763431/140‑1 (MQ=255) aGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGcc < 1:2027670/140‑1 (MQ=255) aGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGcc < 1:832321/140‑1 (MQ=255) gTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTTGA‑ATGCCCCCCTTTTTCCATAATGTTTTCGCCTCGCCCCGTTGCCCGCGCCGGcccc > 2:1868265/1‑140 (MQ=255) tCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGG‑ATGGCCCCCTTTTTCAATAATATTTTCGCCTCCCGCTGTTGCCAGCGCACGccccc > 2:2027670/1‑140 (MQ=255) tCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGG‑ATGCCCCCCTTTTTTAATAATTTTTTCGCCTCCCGCCGTAGCCCGCGCCGGccccc > 2:1538681/1‑140 (MQ=255) cAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGA‑ATGCCCCCCTTTTTCAATAATATTTTCGCCCCGCGCCGTAGCCCGCGCCGGcccccc > 2:1340623/1‑140 (MQ=255) aGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCt < 2:2074969/140‑1 (MQ=255) aGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCt < 1:1624960/140‑1 (MQ=255) aGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGG‑ATGCCCCCCTTTTTTAATAATATTTTTGCCCCGCGCTGTAGCCCGCGCAGGccccccc > 2:353150/1‑139 (MQ=255) ccTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACcgcg < 1:1246894/140‑1 (MQ=255) ccTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACcgcg < 1:337621/140‑1 (MQ=255) ccTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACcgcg < 2:314384/140‑1 (MQ=255) ccTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACcgcg < 1:353150/140‑1 (MQ=255) ccTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACcgcg < 1:41112/140‑1 (MQ=255) gACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGAt < 1:786473/140‑1 (MQ=255) aCTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GGCGGGTGTTA‑TTGCCCCCCTTTTTC‑ATAAAATTTTGGCCCCGCGCCGTAGACACGGCGGACCccccccgcccccccgccgcg > 2:463719/1‑136 (MQ=255) tGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑a < 1:1868265/140‑1 (MQ=255) agaTTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGA‑ATGCCCCCCTTTTGTAATAATGTTTTCGCCTCCCGCTGTAGCCCGCGCAGGCCCCCCCCCCCCCCCCGCGATG‑C‑AAc > 2:1826120/1‑140 (MQ=255) gaTTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGCGGG‑GGGGTCAG‑CTTCCCCCTTTTT‑TAATAAATTTTTTGCCTCCCCCTGTAGCCATCGGACGCCCCCCCCGCCCCCCCCCGGTG‑C‑GAcc > 2:291674/1‑139 (MQ=255) aTTTCGTTCGATACCCTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGt < 1:463719/140‑1 (MQ=255) tcgttcgATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTGGA‑ATGCCCCCCTTTTTTTATAATGTTTTTGCCCCCCGCCGGCGCCCGCGCACGGCCCCCCCCCCACCCCCCCATG‑CAAACGTTg > 2:578419/1‑140 (MQ=255) cgATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCg < 1:578419/140‑1 (MQ=255) cgATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTTGA‑ATGCCCCCCTTTTTCAATAATGTTTTCGCCCCGCGCTGTAGCCAGCGCAGGCCCCCCCCCCCCCCCCGCCCCG‑C‑AACGTTgggagcc > 2:435128/1‑135 (MQ=255) cgATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCCACCGGCCCCCTTTTTTC‑ACAATGATTTCGGCCCCCGCCGTAGCCCACGCCAGCCCCCCCCCCCACCGCCCGAGGCC‑AACGTgggatcg > 2:1452099/1‑136 (MQ=255) aTACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGcc < 1:686341/140‑1 (MQ=255) tCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGC‑ATGCCCCCCTTTTTCAATAATGTTTTTGCCCCGCGCCGTAGCCAGCGCAGGCCCCCCCCCCCCCCCCCCGCTG‑C‑AACGTTGGGGTCGCCGCTGAt > 2:1811920/1‑140 (MQ=255) ccTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCg < 2:1902528/140‑1 (MQ=255) ccTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCg < 2:1761039/140‑1 (MQ=255) ccTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCg < 1:1702741/140‑1 (MQ=255) tGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGcc < 2:419824/140‑1 (MQ=255) tGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGcc < 2:1607112/140‑1 (MQ=255) gTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCa < 1:2091105/140‑1 (MQ=255) gTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGC‑ATGCCCCCCTTTTTCAATAAATTTTTTGCCCCCCGCCGTAGCCAGCGCCGGCCCCCCCCCCCCCCCCCCCGTG‑C‑CACGCTGGTATTGCCGCTGGTCGccc > 2:708339/1‑139 (MQ=255) gTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGA‑ATGCCCCCCTTTTTCTATAAATTTTTTGCCTCCCGCCGTAGCCAGCGCCGGCCCCCCCCCCCCCCCCCCCCTG‑C‑AACGGTGGGATCGCCGGTTGTCGccc > 2:1503663/1‑139 (MQ=255) gTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGGTGA‑ATGTGCCCCTTTTTTAATAAATTTTTCGCCTCCCGCCCGCGCCAACGCAGGCCCCCCCCCCCCCCCCCCCGTC‑CAAACGTTGG‑ATCGCCGTTGTTTGccc > 2:1000541/1‑139 (MQ=255) tCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCAt < 1:2003742/140‑1 (MQ=255) tCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCAt < 2:367941/140‑1 (MQ=255) cGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTCGA‑ATGCCCCCCTTTTTCAATAATATTTGCCCCTCGCGCCGTAGCCCGCGCAGGCCCCCCCCCCCCCCCCCCCGCG‑C‑AACGCTGGGATCGCCGCTGGTCGCCCTc > 2:1236132/1‑140 (MQ=255) aCTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGt < 1:1705735/140‑1 (MQ=255) aCTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGt < 1:1811920/140‑1 (MQ=255) aCTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGt < 1:291674/140‑1 (MQ=255) aCTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGt < 1:25619/140‑1 (MQ=255) tGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAg < 1:1452099/140‑1 (MQ=255) tGCCGGAGATAATCGAGATCGGC‑GG‑GGGGTTGG‑ACGCCCCCTTTTTTTCAGAATTTTTTGGCCTCCCGCCGTAGCCCGCGGCGGGCCCCCCCACCCCCCCCCGGCG‑C‑AACCCTGGTATCGCCCGTGTTCGCCATcagcag > 2:167948/1‑140 (MQ=255) ccGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGa < 1:1375708/140‑1 (MQ=255) gagaTAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCa < 1:1226301/140‑1 (MQ=255) gagaTAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCa < 2:2080913/140‑1 (MQ=255) gagaTAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCa < 2:1154468/140‑1 (MQ=255) gagaTAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCa < 1:900788/140‑1 (MQ=255) gagaTAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCa < 1:24302/140‑1 (MQ=255) gaTAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCAAg < 1:167948/140‑1 (MQ=255) aTAATCGAGATCGGC‑GG‑GGGGTTGA‑ATTCCCCCCTTTTTCAATAATATTTTCGCCCCGCGCCGTAGCCAGCGCCGGCCCCCCCCCCCCCCCCGCGCTG‑G‑CACGGTTGGATTGCCCCTGATTGCCCTCCGTAGGAGGAAgg > 2:1721194/1‑140 (MQ=255) aTCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCAAGGTAt < 2:559440/140‑1 (MQ=255) aTCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCAAGGTAt < 1:1503663/140‑1 (MQ=255) agaTCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCAAGGTATCGAg < 1:512247/140‑1 (MQ=255) agaTCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCAAGGTATCGAg < 1:1470954/140‑1 (MQ=255) gc‑gg‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCAAGGTATCGAGCAATGc < 1:1273517/140‑1 (MQ=255) gc‑gg‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCAAGGTATCGAGCAATGc < 1:1133758/140‑1 (MQ=255) c‑gg‑GGGGTCGA‑ATGCCCCCCTTTTTCAATAATGTTTTCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCCCGCCCCCCCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCCTCAGTAGGAGGAAGGGATCGAGCAATGcc > 2:1273517/1‑140 (MQ=255) gTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCAAGGTATCGAGCAATGCCAGTTc < 1:1721194/140‑1 (MQ=255) | TTTATCAAGTGCTTAAATAATTAAATCTGTGCTAAAAACCAGGTAAGGATCAGTAGGTCAGCACTGCCGCCTGGACTGAGATTTCGTTCGATACACTCCCTGTCGAACTGCCGGAGATAATCGAGATCGGC‑GG‑GGGTTCGA‑ATGCCCCCTTTTTGCAATAATGTTTGCGCCTCGCGCTGTAGCCAGCGCAGGCCCCCCTCGCCACCGCGCGATG‑C‑AACGTTGGTATCGCCGTTGATCGCCATCAGTAGGAGCAAGGTATCGAGCAATGCCAGTTC > NC_000913/646611‑646885 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |