| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,768,355 | C→T | S60L (TCA→TTA) | yibG → | tetratricopeptide‑like domain‑containing protein YibG |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,768,355 | 0 | C | T | 98.1% | 170.4 / ‑4.0 | 52 | S60L (TCA→TTA) | yibG | tetratricopeptide‑like domain‑containing protein YibG |
| Reads supporting (aligned to +/- strand): ref base C (0/1); new base T (23/28); total (23/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.13e-01 | |||||||||||
AATTGCATGGTGCTGATGTGAAAATAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATCATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCAGTTTAATTATGGGGTCTTTTTATCAGATACAAATC > NC_000913/3768223‑3768489 | aaTTGCATGGTGCTGATGTGAAAATAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGa < 2:1700897/140‑1 (MQ=255)aaTTGCATGGTGCTGATGTGAAAATAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGa < 1:1289781/140‑1 (MQ=255)aaTTGCATGGTGCTGATGTGAAAATAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGa < 2:1528361/140‑1 (MQ=255)aaTTGCATGGTGCTGATGTGAAAATAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGa < 1:1734919/140‑1 (MQ=255) gCATGGTGCTGATGTGAAAATAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACtat < 1:1399319/140‑1 (MQ=255) gCATGGTGCTGATGTGAAAATAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACtat < 1:1420916/140‑1 (MQ=255) cATGGTGCTGATGTGAAAATAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACtata > 1:1697816/1‑140 (MQ=255) tGGTGCTGATGTGAAAATAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATc < 2:1264261/140‑1 (MQ=255) tGGTGCTGATGTGAAAATAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATc < 1:1583818/140‑1 (MQ=255) tGCTGATGTGAAAATAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAat > 1:1285056/1‑140 (MQ=255) cTGATGTGAAAATAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAatat < 2:1668711/140‑1 (MQ=255) cTGATGTGAAAATAAAACAAAACGAAAGGATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAatat > 1:1656047/1‑140 (MQ=255) gATGTGAAAATAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTa < 2:1448458/140‑1 (MQ=255) aaaaTAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCtt > 2:1785991/1‑140 (MQ=255) aaaaTAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCtt > 1:1303379/1‑140 (MQ=255) aaaaTAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCtt > 1:1627904/1‑140 (MQ=255) aaaaTAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCtt > 1:1641245/1‑140 (MQ=255) aaaaTAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCtt > 2:1579462/1‑140 (MQ=255) aaaaTAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCtt > 1:1352837/1‑140 (MQ=255) aacaaaacGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGGATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTaaa > 2:1573852/1‑140 (MQ=255) aaaacGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAAt < 2:1682410/140‑1 (MQ=255) aaGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACAttt > 1:1621842/1‑140 (MQ=255) gTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGc < 2:1541764/140‑1 (MQ=255) tACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGAt < 1:1456070/140‑1 (MQ=255) aTGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGa > 1:1305723/1‑140 (MQ=255) tGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGaa > 2:1316395/1‑140 (MQ=255) tGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAg < 2:1697816/140‑1 (MQ=255) aGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCa > 1:1679593/1‑140 (MQ=255) gTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAg < 1:1573852/140‑1 (MQ=255) gaagaaAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAggg < 1:1457804/140‑1 (MQ=255) gaagaaAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAggg > 1:1543498/1‑140 (MQ=255) ttGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTAc > 1:1675096/1‑140 (MQ=255) gatgaAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAg < 1:1780153/140‑1 (MQ=255) gatgaAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAg < 2:1632902/140‑1 (MQ=255) atgaAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAgc < 2:1621842/140‑1 (MQ=255) tgaATCTGAAGTATAAAGCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAgcg < 1:1615285/140‑1 (MQ=255) tgaAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAgcg < 1:1579462/140‑1 (MQ=255) tgaAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAgcg < 2:1305723/140‑1 (MQ=255) tgaAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAgcg < 2:1335541/140‑1 (MQ=255) aaCTGAAGTATAAATCACAACATGGTGATTCAGAGGCATCATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCAg < 1:1455657/140‑1 (MQ=255) taAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCAGTTTAATTATg > 2:1367555/1‑140 (MQ=255) taAATCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCAGTTTAATTATg < 2:1303379/140‑1 (MQ=255) aaTCACAACATGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCAGTTTAATTATggg < 2:1352837/140‑1 (MQ=255) aacaTGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCGGTTTAATTATGGGGTCttt < 2:1675096/140‑1 (MQ=255) caTGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCAGTTTAATTATGGGGTCttttt > 2:1683236/1‑140 (MQ=255) caTGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCAGTTTAATTATGGGGTCttttt > 2:1431069/1‑140 (MQ=255) tGGTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCAGTTTAATTATGGGGTCTTTTTAt < 2:1627904/140‑1 (MQ=255) ggTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCAGTTTAATTATGGGGTCTTTTTATc > 2:1504117/1‑140 (MQ=255) ggTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCAGTTTAATTATGGGGTCTTTTTATc > 1:1259876/1‑140 (MQ=255) ggTGATTCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCAGTTTAATTATGGGGTCTTTTTATc > 2:1408106/1‑140 (MQ=255) tCAGAGGCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCAGTTTAATTATGGGGTCTTTTTATCAGATAc < 1:1316395/140‑1 (MQ=255) ggCATTATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCAGTTTAATTATGGGGTCTTTTTATCAGATACAAATc > 2:1509358/1‑140 (MQ=255) | AATTGCATGGTGCTGATGTGAAAATAAAACAAAACGAAAGTATGATGGGGTCTACAGCAATGACCTATGATTTAAGTGAAGAAAAGTTGATGAAACTGAAGTATAAATCACAACATGGTGATTCAGAGGCATCATTTCGACTATATCAATATTACTGCTTTACTAAAAATAACATTTACAAACAATTGCGATTCTTGGAAAGATCAGCATCTCAGGGGAATGTTACAGCGCAGTTTAATTATGGGGTCTTTTTATCAGATACAAATC > NC_000913/3768223‑3768489 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |