| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 46 (0.810) | 36/276 | 0.5 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3762108 | 0 (0.000) | intergenic (‑153/‑75) | yibF/rhsA | glutathione transferase‑like protein YibF/rhs element protein RhsA | |||||
AAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGG > NC_000913/3761977‑3762247 | aaaaTATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtg > 1:161446‑M2/1‑132 (MQ=255) aGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaag > 1:796203‑M2/1‑124 (MQ=255) gTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagt < 2:829647‑M2/140‑18 (MQ=255) aTGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtcc > 1:343381‑M2/1‑121 (MQ=255) tGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccc < 1:752013‑M2/140‑21 (MQ=255) ggTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatat > 2:752013‑M2/1‑114 (MQ=255) ggTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatat > 1:505654‑M2/1‑114 (MQ=255) tGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatga < 1:217493‑M2/140‑29 (MQ=255) tGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatga < 2:398955‑M2/140‑29 (MQ=255) ggccaaagggcAGAAAATGTTGATGGTTTGTTACTTCCAAATTAATCACATATTTATCATGGCGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatct < 2:428544‑M2/136‑34 (MQ=255) aaaaGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgt > 1:326386‑M2/1‑104 (MQ=255) aaaGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtt < 1:752571‑M2/140‑38 (MQ=255) aaGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgttt < 2:132014‑M2/140‑39 (MQ=255) gggCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgt < 1:825074‑M2/140‑41 (MQ=255) cAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcat < 1:459778‑M2/140‑44 (MQ=255) aGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatc > 1:569443‑M2/1‑96 (MQ=255) aaaTGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgg > 1:441557‑M2/1‑93 (MQ=255) tGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccataga < 2:732915‑M2/140‑57 (MQ=255) ggTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaa > 2:459778‑M2/1‑83 (MQ=255) gTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaac > 2:22864‑M2/1‑82 (MQ=255) ttGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 1:795239‑M2/140‑61 (MQ=255) aaatCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc > 1:732915‑M2/1‑65 (MQ=255) aaatCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtc > 1:265930‑M2/1‑65 (MQ=255) aatCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca > 2:795239‑M2/1‑64 (MQ=255) tATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct < 2:249617‑M2/140‑88 (MQ=255) tGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgcc < 1:259482‑M2/140‑93 (MQ=255) tGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgcc < 2:25728‑M2/140‑93 (MQ=255) ggTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccg < 2:368609‑M2/140‑94 (MQ=255) gATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaca > 2:752571‑M2/1‑44 (MQ=255) atatTTTCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaatt < 2:632906‑M2/140‑104 (MQ=255) tttCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagc < 1:66978‑M2/140‑108 (MQ=255) tCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcag < 1:328089‑M2/140‑110 (MQ=255) tCCTAATTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcag < 2:217615‑M2/140‑110 (MQ=255) aaTTATTTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaag > 1:632906‑M2/1‑27 (MQ=255) attattTCACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc > 1:249617‑M2/1‑26 (MQ=255) cACTCTGATGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtca > 2:66978‑M2/1‑19 (MQ=255) aTGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac > 2:368506‑M2/1‑12 (MQ=255) aTGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagac < 1:368506‑M2/136‑125 (MQ=255) tGGATATCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaa > 1:25728‑M2/1‑11 (MQ=255) atCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagag < 1:109302‑M2/140‑135 (MQ=255) atCTCAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagag < 1:330664‑M2/140‑135 (MQ=255) ctcAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtca > 1:186546‑M2/1‑4 (MQ=255) ctcAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtca < 2:186546‑M2/125‑122 (MQ=255) cAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattt < 2:128367‑M2/140‑139 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt > 2:4009‑M2/1‑1 (MQ=255) aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatttt < 2:766437‑M2/140‑140 (MQ=255) | AAAATATCAGTATGGCCTGGTGATGGGAAAAAGGGCAGAAAATGTTGATGGTTTGTTACTTCCAAATAAATCACATATTTATCATGGTGATATAAATATTTTCCTAATTATTTCACTCTGATGGATATCTCACTTCAGGCTTTCTTATAAATCTGTAGGGTTTCGCCTGTCAGCAGACAAATAACCCGATAAAACAAGGATGAGAAATGAGCGGAAAACCGGCAGCGCGTCAGGGCGACATGACGCAGTATGGCGGTAGCATTGTTCAGGG > NC_000913/3761977‑3762247 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |