BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	116 (1.540)	110 (1.470)	54/274	0.2	65.2%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
*	?	NC_000913	3766087 =	2 (0.030)	110 (1.470)	54/274	0.2	65.2%	coding (3905/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 233 total aligned reads displayed.

CCAATGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362862‑3363140

          tGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCg                                                                                                                                    >  1:169173/1‑140 (MQ=255)

           ggTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑a                                                                                                                                  >  1:756551/1‑140 (MQ=255)

                  agaTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑aaaaaaaa                                                                                                                           <  2:326213/140‑1 (MQ=255)

                  acgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑aaaaaaaa                                                                                                                           >  2:682795‑M1/122‑140 (MQ=255)

                      tGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCa                                                                                                                       >  2:474005/1‑140 (MQ=255)

                      tGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCa                                                                                                                       >  1:368897/1‑140 (MQ=255)

                      tGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCa                                                                                                                       >  2:1157770/1‑140 (MQ=255)

                       gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTTGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      >  2:583531/1‑140 (MQ=255)

                       gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      >  2:357960/1‑140 (MQ=255)

                       gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      >  1:350672/1‑140 (MQ=255)

                         atctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACa                                                                                                                    <  2:20272‑M1/26‑1 (MQ=255)

                            tGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑aaa                                                                                                                                >  1:786571/1‑125 (MQ=255)

                             gTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGc                                                                                                                <  2:169173/140‑1 (MQ=255)

                               tGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTa                                                                                                              <  2:508799/140‑1 (MQ=255)

                                gggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTAc                                                                                                             <  1:1195978‑M1/33‑1 (MQ=255)

                                 ggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTAcg                                                                                                            >  1:598021‑M1/107‑140 (MQ=255)

                                                    aaaaTCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCg                                                                                         >  2:1140521/1‑140 (MQ=255)

                                                        tctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     >  1:20272‑M1/84‑140 (MQ=255)

                                                        tctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     >  2:917152‑M1/84‑140 (MQ=255)

                                                        tctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  2:604708‑M1/57‑1 (MQ=255)

                                                           gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATgg                                                                                           >  2:40243‑M1/81‑131 (MQ=255)

                                                           gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  <  2:763808‑M1/60‑1 (MQ=255)

                                                           gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  <  2:866990‑M1/60‑1 (MQ=255)

                                                                ttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTg                                                                             <  1:884628‑M1/65‑1 (MQ=255)

                                                                 gtAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGa                                                                            <  1:474005/140‑1 (MQ=255)

                                                                    gATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCa                                                                         >  1:51486/1‑140 (MQ=255)

                                                                    gATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCa                                                                         >  1:923024/1‑140 (MQ=255)

                                                                        cTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     >  1:85872/1‑124 (MQ=255)

                                                                        cTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  2:85872/124‑1 (MQ=255)

                                                                          aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  1:1134873/1‑140 (MQ=255)

                                                                          aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  1:452206/1‑140 (MQ=255)

                                                                           ttgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAttt                                                                  <  1:875148‑M1/76‑1 (MQ=255)

                                                                            tatatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTc                                                                 <  2:668597/140‑1 (MQ=255)

                                                                                tCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGca                                                             >  2:645442/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:293452/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:129873/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:1196072/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:554254/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:534321/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:442028/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:1026293/1‑140 (MQ=255)

                                                                                  gatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaac                                                           <  1:447724‑M1/83‑1 (MQ=255)

                                                                                   cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaaca                                                          >  2:706227/1‑140 (MQ=255)

                                                                                      tattTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       <  2:63416/140‑1 (MQ=255)

                                                                                      tattTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       <  1:1026293/140‑1 (MQ=255)

                                                                                            ccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGttt                                                 <  2:1100807‑M1/93‑1 (MQ=255)

                                                                                            ccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGttt                                                 <  2:93655‑M1/93‑1 (MQ=255)

                                                                                             cctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                <  1:600263‑M1/94‑1 (MQ=255)

                                                                                             cctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                <  2:1177500‑M1/94‑1 (MQ=255)

                                                                                             cccGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                >  2:813984/1‑140 (MQ=255)

                                                                                                gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTTATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  2:1259399‑M1/97‑1 (MQ=255)

                                                                                                gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       >  1:327892‑M1/44‑130 (MQ=255)

                                                                                                gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  2:776008‑M1/97‑1 (MQ=255)

                                                                                                gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  2:254717‑M1/97‑1 (MQ=255)

                                                                                                gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  2:1266315‑M1/97‑1 (MQ=255)

                                                                                                  gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAAAGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGcc                                                      <  2:791441‑M1/88‑1 (MQ=255)

                                                                                                     tgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTcc                                        <  2:388892‑M1/102‑1 (MQ=255)

                                                                                                           atttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTga                                  <  1:257754‑M1/108‑1 (MQ=255)

                                                                                                             ttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                <  2:336056‑M1/110‑1 (MQ=255)

                                                                                                                   gagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaaaaa                          >  1:913594‑M1/25‑140 (MQ=255)

                                                                                                                     gTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAAt                        >  2:430339/1‑140 (MQ=255)

                                                                                                                      aagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATg                       >  1:604708‑M1/22‑140 (MQ=255)

                                                                                                                           atcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  1:137527‑M1/17‑140 (MQ=255)

                                                                                                                           atcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  1:894409‑M1/17‑140 (MQ=255)

                                                                                                                           atTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  2:452206/140‑1 (MQ=255)

                                                                                                                           atTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:534321/140‑1 (MQ=255)

                                                                                                                           atTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  2:875121/140‑1 (MQ=255)

                                                                                                                             tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:1149561/140‑1 (MQ=255)

                                                                                                                             tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:658756/140‑1 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:1144888‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:93655‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:776008‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:901987‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:869644‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:254717‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:336056‑M1/15‑140 (MQ=255)

                                                                                                                               aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  2:72444/1‑140 (MQ=255)

                                                                                                                               aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  1:1141843/1‑140 (MQ=255)

                                                                                                                               aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  2:332101/1‑140 (MQ=255)

                                                                                                                                tgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             <  1:396780‑M1/129‑1 (MQ=255)

                                                                                                                                cTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  1:1247101/1‑140 (MQ=255)

                                                                                                                                 tGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            <  1:414760/140‑1 (MQ=255)

                                                                                                                                  gATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  2:485251/1‑137 (MQ=255)

                                                                                                                                  gATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              <  1:485251/137‑1 (MQ=255)

                                                                                                                                  gATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  1:728418/140‑1 (MQ=255)

                                                                                                                                      gTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatat       <  2:1223181/140‑1 (MQ=255)

                                                                                                                                      atctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:106337‑M1/6‑131 (MQ=255)

                                                                                                                                      atctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:106337‑M1/126‑1 (MQ=255)

                                                                                                                                      atctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatat       <  1:505469‑M1/135‑1 (MQ=255)

                                                                                                                                      atctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  1:705870‑M1/131‑1 (MQ=255)

                                                                                                                                       tctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  2:277454‑M1/136‑1 (MQ=255)

                                                                                                                                       tATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:739855/130‑1 (MQ=255)

                                                                                                                                       tATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:884934/130‑1 (MQ=255)

                                                                                                                                          cAGTAAATGGCGAAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTatatat     <  1:681290/139‑1 (MQ=255)

                                                                                                                                          aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  1:712258‑M1/139‑1 (MQ=255)

                                                                                                                                           AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:1008986‑M1/1‑126 (MQ=255)

                                                                                                                                           AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:1008986‑M1/126‑1 (MQ=255)

                                                                                                                                           AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  1:1208409‑M1/140‑1 (MQ=255)

                                                                                                                                           AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  1:803166‑M1/140‑1 (MQ=255)

                                                                                                                                           AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  1:1110335‑M1/140‑1 (MQ=255)

CCAATGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362862‑3363140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.