Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,760,302	G→T	E440* (GAA→TAA)	yfjI →	CP4‑57 prophage; protein YfjI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,760,302	0	G	T	100.0%	236.7 / NA	66	E440* (GAA→TAA)	yfjI	CP4‑57 prophage; protein YfjI
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (32/34);  total (32/34)

ATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGACTTAATTTAAGAGTAAAAACA  >  NC_000913/2760171‑2760437                                                                                                                                    |                                                                                                                                        aTGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAaattaattaatt                                                                                                                                 >  1:899334/1‑140 (MQ=255) aTGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAaattaattaatt                                                                                                                                 >  2:118305/1‑140 (MQ=255) aTGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAaattaattaatt                                                                                                                                 >  2:813827/1‑140 (MQ=255)    tttCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGa                                                                                                                              >  2:1196158/1‑140 (MQ=255)      tCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAAt                                                                                                                            >  2:1243339/1‑140 (MQ=255)      tCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAAt                                                                                                                            <  2:424431/140‑1 (MQ=255)      tCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAAt                                                                                                                            >  2:555016/1‑140 (MQ=255)      tCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAAt                                                                                                                            >  1:1178218/1‑140 (MQ=255)          aaGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTa                                                                                                                        >  2:1246137/1‑140 (MQ=255)           aGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTaa                                                                                                                       <  1:484836/140‑1 (MQ=255)                aTGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTca                                                                                                                  >  2:1063941/1‑140 (MQ=255)                aTGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTca                                                                                                                  <  1:443215/140‑1 (MQ=255)                 tGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTATAATCTTAATTTcac                                                                                                                 <  2:222705/140‑1 (MQ=255)                    gCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCacaaa                                                                                                              <  2:260453/140‑1 (MQ=255)                     cTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCacaaaa                                                                                                             >  1:1129590/1‑140 (MQ=255)                      tttATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCacaaaac                                                                                                            >  2:544039/1‑140 (MQ=255)                      tttATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCacaaaac                                                                                                            <  1:1246137/140‑1 (MQ=255)                       ttATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCacaaaaca                                                                                                           <  2:709745/140‑1 (MQ=255)                       ttATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCacaaaaca                                                                                                           <  1:330072/140‑1 (MQ=255)                       ttATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCacaaaaca                                                                                                           <  1:92602/140‑1 (MQ=255)                       ttATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCacaaaaca                                                                                                           >  2:330072/1‑140 (MQ=255)                         aTTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCacaaaacaaa                                                                                                         <  1:1063941/140‑1 (MQ=255)                               ggATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCacaaaacaaa                                                                                                         <  2:29390/134‑1 (MQ=255)                               ggATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCacaaaacaaa                                                                                                         >  1:29390/1‑134 (MQ=255)                               ggATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATAttt                                                                                                   >  1:1136949/1‑140 (MQ=255)                                 aTAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTtat                                                                                                 <  1:504297/140‑1 (MQ=255)                                 aTAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTtat                                                                                                 <  1:223984/140‑1 (MQ=255)                                  tAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTtata                                                                                                <  1:101731/140‑1 (MQ=255)                                  tAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTtata                                                                                                <  1:544039/140‑1 (MQ=255)                                  tAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTtata                                                                                                <  2:867809/140‑1 (MQ=255)                                   aaaaGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTatat                                                                                               <  2:322496/140‑1 (MQ=255)                                   aaaaGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTatat                                                                                               <  1:1148008/140‑1 (MQ=255)                                     aaGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCt                                                                                             >  2:1160051/1‑140 (MQ=255)                                       gATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTc                                                                                           >  1:412430/1‑140 (MQ=255)                                        aTTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCa                                                                                          <  1:980021/140‑1 (MQ=255)                                        aTTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCa                                                                                          <  1:993285/140‑1 (MQ=255)                                           aCTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGTCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATgg                                                                                       >  1:61829/1‑140 (MQ=255)                                           aCTGCACGCAAAAATTTTCTTCCTGCATCAACAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAAGTAATTACTTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATgg                                                                                       >  2:785416/1‑140 (MQ=255)                                             tGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATgggg                                                                                     >  1:579878/1‑140 (MQ=255)                                              gCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGt                                                                                    <  1:1243228/140‑1 (MQ=255)                                              gCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGt                                                                                    <  2:640711/140‑1 (MQ=255)                                               cACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTa                                                                                   >  2:465221/1‑140 (MQ=255)                                               cACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTa                                                                                   >  2:128471/1‑140 (MQ=255)                                               cACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTa                                                                                   >  2:1209315/1‑140 (MQ=255)                                                 cGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTaaa                                                                                 >  1:22919/1‑140 (MQ=255)                                                     aaaaTTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACaa                                                                             <  2:579878/140‑1 (MQ=255)                                                     aaaaTTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACaa                                                                             <  2:490998/140‑1 (MQ=255)                                                           ttcttcCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAaataa                                                                       <  2:240092/140‑1 (MQ=255)                                                            tcttcCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAaataat                                                                      <  1:45046/140‑1 (MQ=255)                                                              ttcCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAAtaataa                                                                    <  2:44067/140‑1 (MQ=255)                                                                ccTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAAc                                                                  >  1:708568/1‑140 (MQ=255)                                                                        caGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACTAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCa                                                          >  2:103707/2‑140 (MQ=255)                                                                              aaTATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTgtgt                                                    >  2:58304/1‑140 (MQ=255)                                                                                    atCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTg                                              >  1:499250/1‑140 (MQ=255)                                                                                     tCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGa                                             >  1:982937/1‑140 (MQ=255)                                                                                          cAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTa                                        >  1:40161/1‑140 (MQ=255)                                                                                             tttGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATg                                     <  1:1196158/140‑1 (MQ=255)                                                                                              ttGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTCCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGa                                    <  1:162034/140‑1 (MQ=255)                                                                                               tGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATATTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGAc                                   >  2:614712/1‑140 (MQ=255)                                                                                                 ggCCAAATAAATTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACaa                                 >  1:129384/1‑140 (MQ=255)                                                                                                       ataaatTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTaaa                           >  2:427769/1‑140 (MQ=255)                                                                                                        taaatTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTaaaa                          <  2:1057760/140‑1 (MQ=255)                                                                                                           atTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGa                       <  1:555016/140‑1 (MQ=255)                                                                                                           atTTAGAAATCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGa                       >  2:929132/1‑140 (MQ=255)                                                                                                                    tCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGACTTAATTTa              <  2:129384/140‑1 (MQ=255)                                                                                                                    tCGTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGACTTAATTTa              <  2:93126/140‑1 (MQ=255)                                                                                                                      gTGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGACTTAATTTAag            >  2:362866/1‑140 (MQ=255)                                                                                                                       tGACAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGACTTAATTTAaga           >  1:40401/1‑140 (MQ=255)                                                                                                                         aCAAGGCAAATTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGACTTAATTTAAGAGt         >  1:74112/1‑140 (MQ=255)                                                                                                                                aaaTTAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGACTTAATTTAAGAGTAAaaaca  <  2:986389/140‑1 (MQ=255)                                                                                                                                    |                                                                                                                                        ATGTTTCAGAAGCAGATGAGCTTTATTGTTGGATAAAAGATTACTGCACGCAAAAATTTTCTTCCTGCATCAAGAAAAATATTATCTTACAATTTGGGCCAAATAAATTTAGAAATCGTGACAAGGCAAATGAATTAATTAGAATCTTAATTTCACAAAACAAAATATTTATATCTTCATGGGGTAAAACAAAAATAATAAACATAACTCATTGTGTTTTTTGATTTTAATGACAATCTAAAAGGACTTAATTTAAGAGTAAAAACA  >  NC_000913/2760171‑2760437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑