| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 445,558 | 0 | A | C | 20.7% | 114.6 / 22.8 | 58 | V370G (GTA→GGA) | yajR | putative major facilitator superfamily transport protein YajR |
| Reads supporting (aligned to +/- strand): ref base A (37/9); new base C (0/12); total (37/21) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.30e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACGCACTTTTAACGCCTCGTTTGCGGCAATGTTCGCCGGGATTTCAATGCGCAAACTGCTGACATACGGCGGTTCTTTCATGGTACTGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGACTCTTTACTGATAAGT > NC_000913/445425‑445692 | aCGCACTTTTAACGCCTCGTTTGCGGCAATGTTCGCCGGGATTTCAATGCGCAAACTGCTGACATACGGCGGTTCTTTCATGGTACTGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCt < 1:383951/140‑1 (MQ=255)aCGCACTTTTAACGCCTCGTTTGCGGCAATGTTCGCCGGGATTTCAATGCGCAAACTGCTGACATACGGCGGTTCTTTCATGGTACTGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCt < 1:324950/140‑1 (MQ=255) gCACTTTTAACGCCTCGTTTGCGGCAATGTTCGCCGGGATTTCAATGCGCAAACTGCTGACATACGGCGGTTCTTTCATGGTACTGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGa < 1:468321/140‑1 (MQ=255) cGCCTCGTTTGCGGCAATGTTCGCCGGGATTTCAATGCGCAAACTGCTGACATACGGCGGTTCTTTCATGGTACTGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCCGA‑CCGTCAAAC‑a > 1:452743/1‑140 (MQ=255) gCCTCGTTTGCGGCAATGTTCGCCGGGATTTCAATGCGCAAACTGCTGACATACGGCGGTTCTTTCATGGTACTGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑At < 1:829075/140‑1 (MQ=255) gCCTCGTTTGCGGCAATGTTCGCCGGGATTTCAATGCGCAAACTGCTGACATACGGCGGTTCTTTCATGGTACTGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑At < 1:25004/140‑1 (MQ=255) ccTCGTTTGCGGCAATGTTCGCCGGGATTTCAATGCGCAAACTGCTGACATACGGCGGTTCTTTCATGGTACTGGCGGCTGTCAGCCACACTGCGGCCAGCATTGCGCCCGCGAGAAAAACCCCCCGA‑CCGGCAAAC‑ATg > 2:965837/1‑140 (MQ=255) tCGTTTGCGGCAATGTTCGCCGGGATTTCAATGCGCAAACTGCTGACATACGGCGGCTCTTTCCTGGTGCTGGCGACCGTTGCCCACACCCCGGCCCCCATTGCCCCGGCGAGGAAAACACCCTCA‑CCGTCCAAC‑ATgtc > 2:1119273/1‑138 (MQ=255) cGTTTGCGGCAATGTTCGCCGGGATTTCAATGCGCAAACTGCTGACATACGGCGGTTCTTTCATGGTACTGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCg < 1:640792/140‑1 (MQ=255) gTTTGCGGCAATGTTCGCCGGGATTTCAATGCGCAAACTGCTGACATACGGCGGTTCTTTCATGGTACTGGCGACTGTCAGCCACACCGCCGCCAGCATTTCGCCAGCGAGAAAAACCCCCCGA‑CCGGCAAAA‑AAGCCGt > 2:16961/1‑140 (MQ=255) cGGCAATGTTCGCCGGGATTTCAATGCGCAAACTGCTGACATACGGCGGGTTTTTTCTGGGGCTTTGGGCTGTTAACCACACCGCGGGCCGCATTTCGCCCGCGAGGAATAACCCCCTA‑CCGTCAAAC‑ATACCGTTTAtt > 2:287452/1‑139 (MQ=255) cAATGTTCGCCGGGATTTCAATGCGCAAACTGCTGACATACGGCGGTTCTTTCATGGTACTGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAg < 1:1052252/140‑1 (MQ=255) aCTGCTGACATACGGCGGTTTTTTCCTTGTACTTGCGACTGTCAGCCACACTGCGGCCAGCATTTCGCCAGCGAGTAATAACCCCTCG‑CCGTCAAAC‑ATTCCGGTAATCCCGCCGCCCCGCCAAACCCCCATcgcccccc > 2:432810/1‑136 (MQ=255) gcgttcttttCAGGGTAGTGGCGGCTGTCCCCCCCCCGGCGCCAAGCTTGGCGCCAGCGAAAAATCCCCCCTGC‑CGGTAAACC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAActggctg < 2:585060/133‑1 (MQ=255) gTTTTTTCATGGTACTGGCGGCTGTCAGCCACACTGCGGCCCGCATTTGGCCCGCGAGAAAAACCCCCTGA‑CCGTCAAAC‑AAGCCGTTAATCCAGCCCCCCCGCGAACCCCCCAACGCCCCCCCCAGAAAatggctgggg > 2:835990/1‑138 (MQ=255) ttctttctGGGTACTGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATCCCCCCTGA‑CCGTAAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCtggtgg < 1:432810/140‑1 (MQ=255) ttCTTTCATGGTGCGGGCGACTGCCGCCCACACGGGGCCAAGCATTGCGCCAGCGAAAATTCCCCCCGGA‑CGGTAAACC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCtggtgg < 2:534629/140‑1 (MQ=255) cATGGTACGGGCGATTGTCACCCACACGGCGGCCAGCATTGCGCCAGCGAGAAATCCCCCCTAC‑CCGTAAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTaaa < 1:287452/140‑1 (MQ=255) gTACTGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACAcc > 1:139461/1‑140 (MQ=255) gTACTGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACAcc > 1:534629/1‑140 (MQ=255) tACTGGCACCTGCCACCCACACTGCGGCCACAATTGCCCCAGCGAAAAATCCCCCCTGA‑CCGCCAAAC‑ATGCCGTAAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACAccc < 2:129175/140‑1 (MQ=255) tACGGGCGACTGTCAGCCACACGGCGGCCAGCATTGCGCCAGCGAAAAATCCCCCCTGC‑CCGACAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACAccc < 2:669512/140‑1 (MQ=255) aCTGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCa > 1:403719/1‑140 (MQ=255) tGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATc > 1:312927/1‑140 (MQ=255) tGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATc > 2:877293/1‑140 (MQ=255) ggCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCg > 2:766574/1‑140 (MQ=255) gCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATCCCCCCTGA‑CCGTAAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGc < 2:1019185/140‑1 (MQ=255) gCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGc > 1:122638/1‑140 (MQ=255) gCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGc > 2:884501/1‑140 (MQ=255) gCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAACCGCCACGCCAAGAAACTGCCTTGTGGGGAAAACACCCATCGc > 2:274661/1‑140 (MQ=255) cGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGcc > 1:55639/1‑140 (MQ=255) gACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATCCCCCCTGC‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCg < 1:884501/140‑1 (MQ=255) ccTGCCACCCACCCGGCGCCCAGCATTGCGCCAGCGAGAAATCCCCCCTGA‑CCGTAAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGt < 2:157913/139‑1 (MQ=255) aCTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGt > 2:335757/1‑140 (MQ=255) aCTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGt > 2:1070405/1‑140 (MQ=255) cTGTCAGCCACACTGCGGCCAGCATTGCGCCGGCGAGAAATCCCCCCTGC‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTa < 2:452743/140‑1 (MQ=255) cTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTa > 1:3863/1‑140 (MQ=255) tGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATCCCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCg < 1:106419/137‑1 (MQ=255) tGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCg > 2:106419/1‑137 (MQ=255) tGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTAc > 2:359161/1‑140 (MQ=255) tGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTAc > 2:996174/1‑140 (MQ=255) tGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTAc > 1:157913/1‑140 (MQ=255) tGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTAc > 1:667504/1‑140 (MQ=255) tCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCt > 1:33049/1‑140 (MQ=255) aGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGTGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCttt > 2:183852/1‑140 (MQ=255) aGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCttt > 2:349713/1‑140 (MQ=255) gCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTg > 1:454378/1‑140 (MQ=255) cctggCGGCCAGCATGGCCCCGGCGAGAAATACCCCCTGC‑CGGTCAACC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAAc < 1:204188/136‑1 (MQ=255) tGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACctg > 1:1040694/1‑140 (MQ=255) tGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACctg > 2:194345/1‑140 (MQ=255) cGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACctgct > 2:808994/1‑140 (MQ=255) cGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCCCCGTACCTTTGTAACctgct > 2:1248129/1‑140 (MQ=255) ggCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACctgctg > 1:889304/1‑140 (MQ=255) ggCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACctgctg > 1:294675/1‑140 (MQ=255) gcaggCATGGCCCCAGCGAAAAATCCCCCCGGC‑CCTCAAAAC‑ATGCCGTTAATCCGGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTgg < 2:198287/136‑1 (MQ=255) gCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTgg > 2:244074/1‑140 (MQ=255) ccaaGCTTTGCGCCAGGGAAAAATCCCCCCTGC‑CCGTAAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTgg < 2:1209277/137‑1 (MQ=255) agaaTTGCGCCAGCAAAAAATCCCCCCTGC‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGACCCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGa < 2:1040694/137‑1 (MQ=255) aGCTTTGCGCCAGCGAAAAATCCCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGa < 2:122638/140‑1 (MQ=255) aGCATTGCGCCAGCGAGAAATCCCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGa < 1:335757/140‑1 (MQ=255) gCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGAc > 1:533320/1‑140 (MQ=255) cATTGCGCCAGCGAGAAATCCCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGAct < 1:835990/140‑1 (MQ=255) cATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGAct > 1:951320/1‑140 (MQ=255) ttGCGCCAGCGAGAAATCCCCCCGGC‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGActct < 2:55639/140‑1 (MQ=255) ttGCCCCAGCAAAAAAT‑CCCCCCGG‑CCGGAAAACGATGCCGTTAACCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGActct < 2:3863/140‑1 (MQ=255) tGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGACTCtt < 1:877293/140‑1 (MQ=255) gcgcCAGCGAGAAATCCCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGACTCttt < 1:808994/140‑1 (MQ=255) cgcCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGTGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGACTCTTTa < 1:183852/140‑1 (MQ=255) cgcCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGACTCTTTa > 2:756012/1‑140 (MQ=255) gCGAGAAATCCCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTgg < 1:472665/125‑1 (MQ=255) gCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTgg > 2:472665/1‑125 (MQ=255) gCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGACTCTTTACTGAt > 2:196400/1‑140 (MQ=255) cGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGACTCTTTACTGATa > 1:581203/1‑140 (MQ=255) aaaaTCCCCCCTGC‑CCGTCAACC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGACTCTTTACTGATAAGt < 2:33049/139‑1 (MQ=255) aaaaTCCCCCCTGC‑CCGTAAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGACTCTTTACTGATAAGt < 2:1097448/139‑1 (MQ=255) aaaTCCCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGACTCTTTa < 1:1178030/130‑1 (MQ=255) aaaTACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGACTCTTTa > 2:1178030/1‑130 (MQ=255) aaaCACCCCCTTACCCGTAAAAC‑ATGCCTTTAATCCAGCCCCCCAGCGAGCCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGACTCTTTACTGATAAGt < 1:274661/140‑1 (MQ=255) | ACGCACTTTTAACGCCTCGTTTGCGGCAATGTTCGCCGGGATTTCAATGCGCAAACTGCTGACATACGGCGGTTCTTTCATGGTACTGGCGACTGTCAGCCACACTGCGGCCAGCATTGCGCCAGCGAGAAATACCCCCTGA‑CCGTCAAAC‑ATGCCGTTAATCCAGCCGCCCAGCGAACCGCCAATCGCCACGCCAAGAAACTGGCTGGTGGAGTAAACACCCATCGCCGTACCTTTGTAACCTGCTGGCGACTCTTTACTGATAAGT > NC_000913/445425‑445692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |