| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,060 | 0 | C | T | 28.7% | 141.1 / 57.8 | 80 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Reads supporting (aligned to +/- strand): ref base C (35/22); new base T (11/12); total (46/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.88e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCT > NC_000913/4295923‑4296188 | cGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑Gc > 2:606701/1‑140 (MQ=32) ttATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTg > 1:502275/1‑140 (MQ=32) tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑Gcc > 2:501327/1‑137 (MQ=32) tATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑Gcc < 1:501327/137‑1 (MQ=33) cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGa > 2:823421/1‑140 (MQ=17) cGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGa > 1:615606/1‑140 (MQ=32) cATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACg > 1:1133915/1‑140 (MQ=17) aTCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGc > 2:884427/1‑140 (MQ=17) tCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCt > 1:51431/1‑140 (MQ=32) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGt < 1:580505/140‑1 (MQ=21) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGt < 1:432241/140‑1 (MQ=25) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGt > 1:875755/1‑140 (MQ=37) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGt > 1:597938/1‑140 (MQ=37) cAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGt < 1:171928/140‑1 (MQ=38) cGCCTGATGCGACGCTTAGCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCtt > 2:472879/1‑140 (MQ=37) cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACg > 2:479549/1‑127 (MQ=17) cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACg < 1:479549/127‑1 (MQ=17) cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCtt > 1:558658/1‑140 (MQ=25) cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCtt > 2:552730/1‑140 (MQ=25) cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCtt > 1:685271/1‑140 (MQ=25) cGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCtt > 1:620889/1‑140 (MQ=37) gCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCTTa < 1:995369/140‑1 (MQ=25) gCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCTTa < 1:957471/140‑1 (MQ=25) ccTGATGCGACGCTTAGCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTAt < 1:472879/140‑1 (MQ=255) ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCTTAt < 1:552730/140‑1 (MQ=25) ccTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCTTAt < 1:501329/140‑1 (MQ=25) tGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCa > 2:486449/1‑140 (MQ=37) gATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAg > 1:79799/1‑140 (MQ=25) gATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAg > 2:892117/1‑140 (MQ=25) aTGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAgg > 1:601309/1‑140 (MQ=25) tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 2:558658/140‑1 (MQ=25) tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 1:302851/140‑1 (MQ=25) tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 2:328585/140‑1 (MQ=25) tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 2:502275/140‑1 (MQ=39) tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 1:486449/140‑1 (MQ=39) tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 2:1242300/140‑1 (MQ=38) tGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGc < 1:1047459/140‑1 (MQ=39) gCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc < 1:314174/140‑1 (MQ=25) gCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCACATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGcc < 2:981483/140‑1 (MQ=25) aCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAT‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTat > 1:820538/1‑139 (MQ=21) aCGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTAc > 1:1248805/1‑140 (MQ=37) ttAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCa < 1:125029/140‑1 (MQ=39) cgcgTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACa < 2:597938/140‑1 (MQ=39) gTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAgcg > 2:1220711/1‑140 (MQ=37) ttATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCaa < 2:875755/140‑1 (MQ=38) ttATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCaa > 2:1188948/1‑140 (MQ=37) cAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGc < 2:258722/140‑1 (MQ=37) gCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTg > 1:1225366/1‑140 (MQ=37) cTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGAt > 1:761843/1‑140 (MQ=37) gCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAg > 2:580505/1‑140 (MQ=37) cAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCg < 2:461425/140‑1 (MQ=37) aGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGt < 1:1188948/140‑1 (MQ=37) gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg > 2:556835/1‑140 (MQ=37) gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg > 2:402463/1‑140 (MQ=37) gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg > 2:432241/1‑140 (MQ=37) gACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg > 1:328585/1‑140 (MQ=37) cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg < 1:59927/138‑1 (MQ=37) cAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTg > 2:59927/1‑138 (MQ=37) tgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt > 1:1107905/2‑140 (MQ=37) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt < 1:402463/140‑1 (MQ=37) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt > 1:716870/1‑140 (MQ=37) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt > 2:273487/1‑140 (MQ=37) cgcAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGAtttt > 2:685346/1‑140 (MQ=37) cAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCACAATAGCCTGATTTAGCGTGATTTTGt > 1:819169/1‑140 (MQ=37) tAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAgg > 2:887540/1‑140 (MQ=37) aGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGt < 2:1107905/140‑1 (MQ=37) aGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGt < 2:620889/140‑1 (MQ=37) ccTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCg > 2:1012077/1‑140 (MQ=38) tGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGCCCGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCAGa > 2:124092/1‑140 (MQ=255) cctccgTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGCCGACTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAgg < 2:722828/135‑1 (MQ=11) tGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCg < 1:556835/140‑1 (MQ=37) tCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCg < 1:887540/140‑1 (MQ=37) tAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATc < 1:606701/140‑1 (MQ=37) tACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGTAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGa > 2:500323/1‑140 (MQ=37) tACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGa > 1:811973/1‑140 (MQ=37) tACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGa > 2:1079706/1‑140 (MQ=37) tACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGa > 2:967500/1‑140 (MQ=37) ccgcATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGGCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCg < 2:761843/140‑1 (MQ=17) cgcATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAgg > 2:878466/1‑48 (MQ=38) tCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCt > 2:768309/1‑140 (MQ=34) | CGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACA‑‑‑‑T‑‑CAAC‑GCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACGCCAGACAGCGCAATAGCCTGATTTAGCGTGATTTTGTAGGTCGGATAAGGCGTTTATGCCGCATCCGACATCAACGCCTGATGCGACGCT > NC_000913/4295923‑4296188 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |