BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913	257,908	Δ776 bp		insB9–[crl]	insB9, insA9, [crl]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913	257908–258676	258683	8–776	102 [0]	[0] 100	insB9–[crl]	insB9,insA9,[crl]

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 257907	0 (0.000)	90 (1.000)	52/260	0.4	100%	intergenic (+8/+16)	crl/insB9	RNA polymerase holoenzyme assembly factor Crl/IS1 transposase B
*	?	NC_000913	258684 =	0 (0.000)	90 (1.000)	52/260	0.4	100%	pseudogene (9/331 nt)	crl	RNA polymerase holoenzyme assembly factor Crl

Only 100 of 102 total aligned reads displayed.

TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTA  >  NC_000913/257768‑258043

ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTA                                                                                                                                          <  1:1333612‑M1/140‑1 (MQ=255)

ttAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTA                                                                                                                                          <  1:1105944‑M1/140‑1 (MQ=255)

        ttGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACACTAGGCCCGTATATTCGTGAAGGTAagtgca                                                                                                                                    >  2:250313‑M1/1‑134 (MQ=255)

        ttGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaa                                                                                                                                  >  1:1371572‑M1/1‑132 (MQ=255)

         tGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTGagtgcaaag                                                                                                                                 <  1:62276‑M1/140‑10 (MQ=255)

              aaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataat                                                                                                                            <  2:877981‑M1/140‑15 (MQ=255)

                  ttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat                                                                                                                        <  1:169346‑M1/140‑19 (MQ=255)

                            ggTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                              <  1:150914‑M1/140‑29 (MQ=255)

                                aaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt                                                                                                          <  1:1166029‑M1/140‑33 (MQ=255)

                                  aCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt                                                                                                          <  1:250313‑M1/140‑33 (MQ=255)

                                    aGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                      <  1:1539001‑M1/140‑37 (MQ=255)

                                    aGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                      <  1:459500‑M1/140‑37 (MQ=255)

                                      ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc                                                                                                     >  2:808474‑M1/1‑102 (MQ=255)

                                      ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc                                                                                                     <  1:808474‑M1/139‑38 (MQ=255)

                                      ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                      >  2:1355174‑M1/1‑102 (MQ=255)

                                      ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctgg                                                                                                      <  1:1355174‑M1/138‑37 (MQ=255)

                                       tGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctg                                                                                                   >  2:1029048‑M1/1‑101 (MQ=255)

                                       tGCATCACAACAGGAGATAGCAATGACGTTACCGAGGGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctg                                                                                                   >  2:1617250‑M1/1‑101 (MQ=255)

                                              caacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                              >  1:982300‑M1/1‑94 (MQ=255)

                                                      gaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtga                                                                                    >  1:1361342‑M1/1‑86 (MQ=255)

                                                         aGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaac                                                                                 >  1:989098‑M1/1‑83 (MQ=255)

                                                         aGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaac                                                                                 >  2:1163175‑M1/1‑83 (MQ=255)

                                                         aGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaac                                                                                 >  2:381324‑M1/1‑83 (MQ=255)

                                                          gCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc                                                                                <  1:381324‑M1/140‑59 (MQ=255)

                                                          gCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc                                                                                <  1:1029048‑M1/140‑59 (MQ=255)

                                                          gCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc                                                                                <  1:100801‑M1/140‑59 (MQ=255)

                                                            aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccgg                                                                              <  2:973107‑M1/140‑61 (MQ=255)

                                                            aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccgg                                                                              <  1:1489809‑M1/140‑61 (MQ=255)

                                                              tGACATTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGCGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggca                                                                            >  2:1235320‑M1/1‑78 (MQ=255)

                                                                aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc                                                                          >  1:299604‑M1/1‑76 (MQ=255)

                                                                aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc                                                                                >  2:518235‑M1/1‑76 (MQ=255)

                                                                aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc                                                                                <  1:518235‑M1/134‑59 (MQ=255)

                                                                 cGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccg                                                                         >  1:1284065‑M1/1‑75 (MQ=255)

                                                                   ttACCGAGTGGACACCCGAAGAGCAGATTGGTCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgga                                                                       >  1:1060042‑M1/1‑73 (MQ=255)

                                                                   ttACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgga                                                                       <  2:925239‑M1/140‑68 (MQ=255)

                                                                   ttACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgga                                                                       >  2:1308694‑M1/1‑73 (MQ=255)

                                                                   ttACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgga                                                                       <  2:1361342‑M1/140‑68 (MQ=255)

                                                                     aCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaag                                                                     >  1:153707‑M1/1‑71 (MQ=255)

                                                                     aCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaag                                                                     >  1:263908‑M1/1‑71 (MQ=255)

                                                                         aGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcg                                                                 >  2:1600193‑M1/1‑67 (MQ=255)

                                                                         aGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgga                                                                       >  1:1174405‑M1/1‑67 (MQ=255)

                                                                         aGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgga                                                                       <  2:1174405‑M1/134‑68 (MQ=255)

                                                                          gTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt                                                                <  2:1284065‑M1/140‑75 (MQ=255)

                                                                           tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtg                                                               <  2:299604‑M1/140‑76 (MQ=255)

                                                                           tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtg                                                               <  1:1041625‑M1/140‑76 (MQ=255)

                                                                            ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtga                                                              >  2:164321‑M1/1‑64 (MQ=255)

                                                                            ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtga                                                              >  2:1615276‑M1/1‑64 (MQ=255)

                                                                            ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtga                                                              >  2:317852‑M1/1‑64 (MQ=255)

                                                                              acacCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaat                                                            >  1:1137431‑M1/1‑62 (MQ=255)

                                                                                acCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattc                                                          >  1:1327364‑M1/1‑60 (MQ=255)

                                                                                     aaGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg                                                     >  1:1007346‑M1/1‑55 (MQ=255)

                                                                                     aaGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg                                                     >  2:645089‑M1/1‑55 (MQ=255)

                                                                                     aaGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg                                                     <  2:1137431‑M1/140‑86 (MQ=255)

                                                                                     aaGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtg                                                               <  2:554514‑M1/130‑76 (MQ=255)

                                                                                     aaGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtg                                                               >  1:554514‑M1/1‑55 (MQ=255)

                                                                                      agagCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggc                                                    <  1:164321‑M1/140‑87 (MQ=255)

                                                                                        agCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctg                                                  >  2:934948‑M1/1‑52 (MQ=255)

                                                                                          cAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggt                                                >  2:243751‑M1/1‑50 (MQ=255)

                                                                                            gATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgg                                              >  2:749816‑M1/1‑48 (MQ=255)

                                                                                            gATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgg                                              >  1:856329‑M1/1‑48 (MQ=255)

                                                                                              ttGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat                                            <  1:1600193‑M1/140‑95 (MQ=255)

                                                                                              ttGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat                                            <  1:749816‑M1/140‑95 (MQ=255)

                                                                                                     aaaaaTTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctg                                     <  2:82479‑M1/140‑102 (MQ=255)

                                                                                                       aaaTTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgga                                   >  1:728979‑M1/1‑37 (MQ=255)

                                                                                                         aTTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaag                                 <  2:1060042‑M1/140‑106 (MQ=255)

                                                                                                         aTTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaag                                 <  1:1308694‑M1/140‑106 (MQ=255)

                                                                                                           ttACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcg                               <  2:1057582‑M1/140‑108 (MQ=255)

                                                                                                                     cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatc                       >  1:771252‑M1/1‑25 (MQ=255)

                                                                                                                         gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt                   <  2:1327364‑M1/140‑120 (MQ=255)

                                                                                                                         gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt                   <  2:856329‑M1/140‑120 (MQ=255)

                                                                                                                         gCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt                   <  2:263908‑M1/140‑120 (MQ=255)

                                                                                                                          cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtt                  <  2:153707‑M1/140‑121 (MQ=255)

                                                                                                                            cGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttt                >  2:157901‑M1/1‑18 (MQ=255)

                                                                                                                            cGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttt                >  2:463797‑M1/1‑18 (MQ=255)

                                                                                                                             gTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttta               >  1:749990‑M1/1‑17 (MQ=255)

                                                                                                                              tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac              >  1:161196‑M1/1‑16 (MQ=255)

                                                                                                                              tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac              >  2:10091‑M1/1‑16 (MQ=255)

                                                                                                                              tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac              >  2:1259323‑M1/1‑16 (MQ=255)

                                                                                                                                tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacct            <  1:1615276‑M1/140‑127 (MQ=255)

                                                                                                                                tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacct            <  1:10091‑M1/140‑127 (MQ=255)

                                                                                                                                 atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta           <  2:1020872‑M1/140‑128 (MQ=255)

                                                                                                                                 atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta           <  2:728979‑M1/140‑128 (MQ=255)

                                                                                                                                  ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctac          >  1:547088‑M1/1‑12 (MQ=255)

                                                                                                                                   tCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca         >  2:27634‑M1/1‑11 (MQ=255)

                                                                                                                                   tCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca         <  2:749990‑M1/140‑130 (MQ=255)

                                                                                                                                   tCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctaca         >  2:863491‑M1/1‑11 (MQ=255)

                                                                                                                                    cGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacag        >  2:1196895‑M1/1‑10 (MQ=255)

                                                                                                                                     gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagt       <  1:317852‑M1/140‑132 (MQ=255)

                                                                                                                                     gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt                   <  2:1333597‑M1/128‑120 (MQ=255)

                                                                                                                                     gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt                   >  1:1333597‑M1/1‑9 (MQ=255)

                                                                                                                                       gAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta     <  1:1589531‑M1/140‑134 (MQ=255)

                                                                                                                                       gAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta     >  2:243736‑M1/1‑7 (MQ=255)

                                                                                                                                        aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttac    >  2:1457695‑M1/1‑6 (MQ=255)

                                                                                                                                        aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta     >  1:466777‑M1/1‑6 (MQ=255)

                                                                                                                                        aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta     <  2:466777‑M1/139‑134 (MQ=255)

                                                                                                                                        aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatccc                     >  2:270072‑M1/1‑6 (MQ=255)

                                                                                                                                        aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatccc                     <  1:270072‑M1/123‑118 (MQ=255)

                                                                                                                                          ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacca  >  2:1003758‑M1/1‑4 (MQ=255)

                                                                                                                                          ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta     <  1:1266178‑M1/137‑134 (MQ=255)

                                                                                                                                          ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta     >  2:1266178‑M1/1‑4 (MQ=255)

TTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCG‑‑CACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTA  >  NC_000913/257768‑258043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`