BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3402697	144 (1.550)	3 (0.030) +TGC	3/266	7.6	2.1%	coding (636/1941 nt)	csrD	regulator of CsrB and CsrC decay
*	?	NC_000913	3402698 =	144 (1.530)	3 (0.030) +TGC	3/266	7.6	2.1%	coding (635/1941 nt)	csrD	regulator of CsrB and CsrC decay
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 147 total aligned reads displayed.

ATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAA  >  NC_000913/3402563‑3402834

 tCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGGCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGAAGGCTGTGT‑‑‑TGCTcc                                                                                                                                     >  2:1144043/1‑139 (MQ=255)

   ccGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTcgcg                                                                                                                                   <  2:319011/140‑1 (MQ=255)

           aCCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCgcgtgcg                                                                                                                               <  2:1482952/136‑1 (MQ=255)

           aCCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCt                                                                                                                           >  2:923382/1‑140 (MQ=255)

           aCCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCt                                                                                                                           >  1:689562/1‑140 (MQ=255)

           aCCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCt                                                                                                                           >  2:349186/1‑140 (MQ=255)

           aCCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCt                                                                                                                           >  1:1381551/1‑140 (MQ=255)

             cTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGa                                                                                                                         >  2:90549/1‑140 (MQ=255)

                cTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAAtt                                                                                                                      <  1:1275438/140‑1 (MQ=255)

                   tctcCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCa                                                                                                                   >  1:659107/1‑140 (MQ=255)

                    ctcCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCAc                                                                                                                  >  2:85067/1‑140 (MQ=255)

                    ctcCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCAc                                                                                                                  >  2:550411/1‑140 (MQ=255)

                     tcCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACg                                                                                                                 >  2:1348754/1‑140 (MQ=255)

                     tcCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACg                                                                                                                 >  2:1470351/1‑140 (MQ=255)

                       cTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGaa                                                                                                               <  2:954312/140‑1 (MQ=255)

                       cTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGaa                                                                                                               <  1:1144043/140‑1 (MQ=255)

                       cTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGaa                                                                                                               <  2:665317/140‑1 (MQ=255)

                       cTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGaa                                                                                                               <  1:1348754/140‑1 (MQ=255)

                       cTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGaa                                                                                                               <  2:534279/140‑1 (MQ=255)

                         gATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGCTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAagc                                                                                                             <  1:138307/140‑1 (MQ=255)

                          aTCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGCTGTTCGCGTGCGTTCTGAATTTCACGaa                                                                                                               >  2:127417/1‑140 (MQ=255)

                          aTCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAagca                                                                                                            >  2:319760/1‑140 (MQ=255)

                          aTCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAagca                                                                                                            >  1:663893/1‑140 (MQ=255)

                          aTCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAagca                                                                                                            >  2:1181152/1‑140 (MQ=255)

                          aTCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAagca                                                                                                            >  2:328711/1‑140 (MQ=255)

                            cTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAagcagc                                                                                                          <  2:1548852/140‑1 (MQ=255)

                             ttCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCg                                                                                                         >  1:1517210/1‑140 (MQ=255)

                               ccAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAagcagc                                                                                                          <  2:905472/137‑1 (MQ=255)

                                 aGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATc                                                                                                     >  1:1510395/1‑140 (MQ=255)

                                    aaCGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAg                                                                                                  <  2:1499129/140‑1 (MQ=255)

                                      cGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcg                                                                                                <  1:85067/140‑1 (MQ=255)

                                      cGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcg                                                                                                >  2:1055121/1‑140 (MQ=255)

                                      cGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcg                                                                                                <  1:1181152/140‑1 (MQ=255)

                                      cGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcg                                                                                                <  1:426353/140‑1 (MQ=255)

                                      cGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcg                                                                                                >  1:1046485/1‑140 (MQ=255)

                                      cGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGACGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcg                                                                                                >  1:69701/1‑140 (MQ=255)

                                       gTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcgc                                                                                               <  1:550411/140‑1 (MQ=255)

                                         tGCTAACTGATTATCGAAAAAGAGTCGGATATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCAc                                                                                             >  1:50924/1‑140 (MQ=255)

                                          gCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCa                                                                                                   <  1:388701/133‑1 (MQ=255)

                                           cTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCActg                                                                                           <  1:349186/140‑1 (MQ=255)

                                           cTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCActg                                                                                           >  1:123156/1‑140 (MQ=255)

                                            tAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCActgc                                                                                          <  2:1195354/140‑1 (MQ=255)

                                                 gATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGtt                                                                                     >  2:935791/1‑140 (MQ=255)

                                                  aTTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTc                                                                                    >  1:119784/1‑140 (MQ=255)

                                                   ttATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcgc                                                                                               <  1:1348410/128‑1 (MQ=255)

                                                   ttATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAgcgc                                                                                               >  2:1348410/1‑128 (MQ=255)

                                                      tCGAAAAAGAGTCGGTTATTGAGGCTGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTggg                                                                                <  2:458138/140‑1 (MQ=255)

                                                      tCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTggg                                                                                <  1:1470351/140‑1 (MQ=255)

                                                       cGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGggc                                                                               <  1:575069/140‑1 (MQ=255)

                                                        gAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGggcg                                                                              <  2:507406/140‑1 (MQ=255)

                                                         aaaaaGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGggcgg                                                                             <  2:1268286/140‑1 (MQ=255)

                                                         aaaaaGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGggcgg                                                                             <  2:1517210/140‑1 (MQ=255)

                                                         aaaaaGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGggcgg                                                                             <  2:214325/140‑1 (MQ=255)

                                                          aaaaGAGTTGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGggcggc                                                                            <  1:1442099/140‑1 (MQ=255)

                                                          aaaaGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGggcggc                                                                            <  1:319760/140‑1 (MQ=255)

                                                          aaaaGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGggcggc                                                                            <  2:659107/140‑1 (MQ=255)

                                                          aaaaGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGggcggc                                                                            <  2:1046485/140‑1 (MQ=255)

                                                          aaaaGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGggcggc                                                                            <  1:978248/140‑1 (MQ=255)

                                                          aaaaGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGggcggc                                                                            <  1:1090474/140‑1 (MQ=255)

                                                          aaaaGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGggcggc                                                                            >  1:931535/1‑140 (MQ=255)

                                                            aaGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCa                                                                          <  1:923382/140‑1 (MQ=255)

                                                             agagTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGTTGCTGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGggcggc                                                                            <  1:127417/140‑1 (MQ=255)

                                                               agTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTc                                                                       <  1:1042534/140‑1 (MQ=255)

                                                               agTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTc                                                                       <  2:931535/140‑1 (MQ=255)

                                                                 tCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCAt                                                                     >  2:1520903/1‑140 (MQ=255)

                                                                    gTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGa                                                                  <  2:119784/140‑1 (MQ=255)

                                                                      tATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATg                                                                <  1:32229/140‑1 (MQ=255)

                                                                        ttGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGa                                                                  <  2:1407464/136‑1 (MQ=255)

                                                                        ttGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGa                                                                  >  1:1407464/1‑136 (MQ=255)

                                                                          gAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGTTCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTc                                                            >  2:184880/1‑140 (MQ=255)

                                                                           aGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTcc                                                           <  2:431257/140‑1 (MQ=255)

                                                                             gCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCa                                                         >  2:1024137/1‑140 (MQ=255)

                                                                              ccGGTTTTCACGTCCTGGGCGGCATAAGAGCGGTTCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCaa                                                        <  1:184880/140‑1 (MQ=255)

                                                                              ccGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATg                                                                <  1:510030/132‑1 (MQ=255)

                                                                              ccGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCaa                                                        <  1:931569/140‑1 (MQ=255)

                                                                              ccGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCaa                                                        >  1:846103/1‑140 (MQ=255)

                                                                                   tttCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACAt                                                   <  1:1546054/140‑1 (MQ=255)

                                                                                       aCGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTaga                                               <  2:123156/140‑1 (MQ=255)

                                                                                            cTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCAc                                          <  1:1024137/140‑1 (MQ=255)

                                                                                            cTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCAc                                          >  2:1055459/1‑140 (MQ=255)

                                                                                            cTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCAc                                          >  2:1586795/1‑140 (MQ=255)

                                                                                               ggcggcATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCt                                       <  1:1085820/140‑1 (MQ=255)

                                                                                               ggcggcATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCt                                       <  2:683784/140‑1 (MQ=255)

                                                                                               ggcggcATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCt                                       <  2:12878/140‑1 (MQ=255)

                                                                                                gcggcATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTc                                      <  1:1586795/140‑1 (MQ=255)

                                                                                                gcggcATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTc                                      <  1:1561772/140‑1 (MQ=255)

                                                                                                 cggcATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCa                                     <  1:90549/140‑1 (MQ=255)

                                                                                                    cATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCg                                  >  1:336242/1‑140 (MQ=255)

                                                                                                    cATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCg                                  <  2:471256/140‑1 (MQ=255)

                                                                                                    cATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCg                                  >  2:880194/1‑140 (MQ=255)

                                                                                                    cATAAGAGCGGATCAGCGTATAAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTc                                      >  2:637122/1‑136 (MQ=255)

                                                                                                     aTAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGt                                 >  2:702879/1‑140 (MQ=255)

                                                                                                       aaGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGttt                               <  1:157867/140‑1 (MQ=255)

                                                                                                                 cAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAg                     >  2:1211711/1‑140 (MQ=255)

                                                                                                                    cGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCGTTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGtt                                <  1:314125/126‑1 (MQ=255)

                                                                                                                       aTCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGccc               <  2:69701/140‑1 (MQ=255)

                                                                                                                             aCGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGttt         <  2:1385617/140‑1 (MQ=255)

                                                                                                                              cGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTc        >  2:548802/1‑140 (MQ=255)

                                                                                                                                 cTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAg     >  1:531958/1‑140 (MQ=255)

                                                                                                                                    tgt‑‑‑tgtTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCTACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCaa  >  2:126499/1‑140 (MQ=255)

ATCCCGTGGGTACCTACTTTCTCCTGATCTTCCAGTAACGTTGCTAACTGATTATCGAAAAAGAGTCGGTTATTGAGGCCGGTTTTCACGTCCTGGGCGGCATAAGAGCGGATCAGCGTATCAAGACGGCTGTGT‑‑‑TGTTCGCGTGCGTTCTGAATTTCACGAAGCAGCGTATCCAGCGCACTGCTGGTTCTGGGCGGCCATTCATAGATGGTTCCCAACACATTAGAGCCACGCTCACCGTTTAAGATACGAGTAGCCCGGGTTTCCAGCAA  >  NC_000913/3402563‑3402834

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.