New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4292118	39 (0.410)	3 (0.030)	3/270	7.7	7.5%	coding (607/1659 nt)	nrfE	putative cytochrome c‑type biogenesis protein NrfE
	?	NC_000913	4292122 =	36 (0.390)					coding (611/1659 nt)	nrfE	putative cytochrome c‑type biogenesis protein NrfE
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGCTGCTTTACCTTGGCTATGGCGGTTTGATGGTAGCGGCGAGCGTGGCGCTGGCGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGATCCGGTGGAAAACGCCTCTTTATTACCCTGGCTTTCTGCCACTGCGCTGCTGCACAGTTTGTCCCT  >  NC_000913/4291980‑4292251                                                                                                                                           |                                                                                                                                        ccGCTGCTTTACCTTGGCTATGGCGGTTTGATGGGAGCGGGGAGCGGGGGGCTGGCGGATTTAATGCGCGGCGCGGTTGGTTGTGCCTGGGCCCGAATTTGCTAGCGCTGGGCGTTATCTGGGGGGAGGGCGTTTAcagc                                                                                                                                        >  2:344666/1‑140 (MQ=255) ccGCTGCTTCACCTTGGCTATGGCGGTTTGATGGTAGCGGCGAGCGTGGCGCTGGCGAGTCTACTGCGCGGCGGGTTTGATGGGGCCCGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGGGTGGATTAAcggc                                                                                                                                        >  2:82692/1‑140 (MQ=255)  cGCTGCTTTACCTTGGCTATGGCGGTTTGATGGTAGCGGCGAGCGTGGCGCTGGCGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAAcggcg                                                                                                                                       <  1:1026134/140‑1 (MQ=255)  cGCTGCTTTACCTTGGCTATGGCGGTTTGATGGTAGCGGCGAGCGGGGCGCTGGGGCGTCTACTGGGCGGGGGGGTTGATGGGGCCTGCGCCCGGATTTGCTGGCGCTGGGCGGTACCTGGCTGGGGTGGATTAAcgggg                                                                                                                                       >  2:1147216/1‑138 (MQ=255)    ctgctTTACCTTGGCTATGGCGGTTTGATGGTAGCGGCGAGCGTGGCGCTGGCGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCggg                                                                                                                                     >  1:430120/1‑140 (MQ=255)       ctTTACCTTGGCTATGGCGGTTTGATGGTAGCGGCGAGCGTGGCGCTGGCGAGTCTACTGCGCGGCGAGGTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCgggggg                                                                                                                                  >  1:292461/1‑138 (MQ=255)       ctTTACCTTGGCTATGGCGGTTTGATGGGAGCGGCGGGCGTGGCGCTGGCGGGTCTACTGCGCGGGGGGTTTGATGGGGCCCGCGCCCGAATTTTGTGGCGCTGGGGGGTTCCTGGCTGGGGGGGATTTACGGCgggggg                                                                                                                                  >  2:42748/1‑138 (MQ=255)        tttACCTTGGCTATGGCGGTTTGATGGTAGCGGCGAGCGTGGCGCTGGCGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGatc                                                                                                                                 <  2:757238/140‑1 (MQ=255)            ccTTGGCTATGGCGGTTTGATGGTAGCGGCGAGCGTGGCGCTGGCGAGTCTACTGCGCGGCGGGTTTGATGGGGCCTGCGCCCGGATTTGCTGGCGCTGGGCGTTACCTGGCTGGGGGGCATTTACGGCgggggggggcc                                                                                                                             >  2:1205047/1‑133 (MQ=255)                 gCTATGGCGGGTTGATGGTAGCGGGGGGCGTGGCGCTGGCGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGt                                                                                                                       <  2:1503435/140‑1 (MQ=255)                       gCGGTTTGATGGTAGCGGCGAGCGTGGCGCTGGCGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCtgg                                                                                                                 <  1:1321004/140‑1 (MQ=255)                            ttGATGGTAGCGGCGAGCGTGGCGCTGGCGAGTCTACTGCGCGGCGAGTTTGATGGCGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGc                                                                                                            <  2:1139551/140‑1 (MQ=255)                                      cggcgAGCGTGGCGCTGGCGGGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGGCCGAATTTGCTGGCGCTGGGCGTTCCCTGGCTAGCGCGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCGACTTCGaa                                                                                                  <  2:787947/140‑1 (MQ=255)                                      cggcgAGCGTGGCGCTGGCGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGaa                                                                                                  <  1:1147216/140‑1 (MQ=255)                                      cggcgAGCGTGGCGCTGGCGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGaa                                                                                                  <  1:280809/140‑1 (MQ=255)                                      cggcgAGCGTGGCGCTGGCGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGaa                                                                                                  <  1:111642/140‑1 (MQ=255)                                      cggcgAGCGTGGCGCTGGCGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGaa                                                                                                  <  1:66021/140‑1 (MQ=255)                                                 gcgcTGGCGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTgggg                                                                                       <  1:525485/140‑1 (MQ=255)                                                      ggCGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑t                                                                                 <  2:192739/140‑1 (MQ=255)                                                        cGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑tgg                                                                               <  1:1029591/140‑1 (MQ=255)                                                        cGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑tgg                                                                               <  2:910084/140‑1 (MQ=255)                                                         gAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGGTCA‑TCCTCGGTTCCTGGTGGGGCCACTGCGGACCCGGCTGGGGGGGG‑tggg                                                                              >  2:90373/1‑139 (MQ=255)                                                          aGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑tggtg                                                                             <  2:430120/140‑1 (MQ=255)                                                            tCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGGTCA‑TCCTCGGGTCCTTGGGGGGCCCCTGCGGACTCCGCTGGGGGGGG‑tgggggg                                                                           >  1:695863/1‑139 (MQ=255)                                                                    gcggcgAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGAt                                                                   <  1:753057/140‑1 (MQ=255)                                                                    gcggcgAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGAt                                                                   <  2:1285906/140‑1 (MQ=255)                                                                    gcggcgAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGAt                                                                   <  1:111771/140‑1 (MQ=255)                                                                     cggcgAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGATc                                                                  <  1:723889/140‑1 (MQ=255)                                                                                caggTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGATCCGGTGGAAAAc                                                       <  1:112500/138‑1 (MQ=255)                                                                                    tGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGACTGGGGCGGC‑TGGTGGTTCTGGGATCCGGTGGAAAACGCct                                                   <  1:1466380/140‑1 (MQ=255)                                                                                      ccTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGATCCGGTGGAAAACGCctct                                                 <  1:1517449/140‑1 (MQ=255)                                                                                      ccTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAA‑‑‑CGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGATCCGGTGGAAAACGCct                                                   >  2:1168118/1‑135 (MQ=255)                                                                                      ccTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAA‑‑‑CGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGATCCGGTGGAAAACGCct                                                   <  1:1168118/135‑1 (MQ=255)                                                                                          cgcCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGATCCGGTGGAAAACGCCTCTttat                                             <  2:288705/140‑1 (MQ=255)                                                                                          cgcCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGATCCGGTGGAAAACGCCTCTttat                                             <  2:718809/140‑1 (MQ=255)                                                                                              cGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGGGCA‑TTCCCCGTTCCTTGGGGGGCTACTTCGGACTCGGCGGGGGGGGG‑GGGGGGGGCTGGGGTGCGGGGGGGAAAGCCCCttttttttt                                         >  2:112500/1‑137 (MQ=255)                                                                                                       tGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGGGGATTCCTCGGTT‑CTGGTGGGGGCCCTCGGCACTCGGCGGGGGGGGCGGGGGGGTTTTGGGTCCGGGGGGAAAAGCCCTCTTTTTTTccccgcattt                                 >  2:266751/1‑133 (MQ=255)                                                                                                               ggCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGATCCGGTGGAAAACGCCTCTTTATTACCCTGGCTTTCTGCCACTg                        <  1:661254/140‑1 (MQ=255)                                                                                                                         ggctggAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGATCCGGTGGAAAACGCCTCTTTATTACCCTGGCTTTCTGCCACTGCGCTGCTGca              <  1:1047273/140‑1 (MQ=255)                                                                                                                                  gCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGATCCGGTGGAAAACGCCTCTTTATTACCCTGGCTTTCTGCCACTGCGCTGCTGCACAGTTTGTc     <  1:1236812/140‑1 (MQ=255)                                                                                                                                  gCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGATCCGGTGGAAAACGCCTCTTTATTACCCTGGCTTTCTGCCACTGCGCTGCTGCACAGTTTGTc     <  1:1385693/140‑1 (MQ=255)                                                                                                                                     ttAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGATCCGGTGGAAAACGCTTCTTTATTACCCTGGCTTTCTGCCACTGCGCTGCTGCACAGTTTGTCCCt  <  1:1291612/140‑1 (MQ=255)                                                                                                                                           |                                                                                                                                        CCGCTGCTTTACCTTGGCTATGGCGGTTTGATGGTAGCGGCGAGCGTGGCGCTGGCGAGTCTACTGCGCGGCGAGTTTGATGGTGCCTGCGCCCGAATTTGCTGGCGCTGGGCGTTACCTGGCTGGAGTGCATTAACGGCGGGGATCA‑TCCTCGGTTCCTGGTGGGCCTACTGCGAACTCGGCTGGGGCGGC‑TGGTGGTTCTGGGATCCGGTGGAAAACGCCTCTTTATTACCCTGGCTTTCTGCCACTGCGCTGCTGCACAGTTTGTCCCT  >  NC_000913/4291980‑4292251

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.