Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG30.1% 170.7 / 20.6 105T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (20/52);  new base G (31/0);  total (53/52)
Fisher's exact test for biased strand distribution p-value = 3.94e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 113 total aligned reads displayed.

AGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568367‑4568641
                                                                                                                                          |                                                                                                                                           
      cAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAc                                                                                                                                     >  1:196196/1‑140 (MQ=255)
      aaGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGaaaaaaaa                                                                                                                                     >  2:1590815/2‑139 (MQ=255)
       aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTTATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGaaaaaaaaa                                                                                                                                    >  2:1250938/1‑138 (MQ=255)
         aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑Tg                                                                                                                                 <  2:1384170/140‑1 (MQ=255)
         aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑Tg                                                                                                                                 <  1:291152/140‑1 (MQ=255)
         aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑Tg                                                                                                                                 <  1:516779/140‑1 (MQ=255)
            gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCa                                                                                                                              <  2:878125/140‑1 (MQ=255)
             aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACA‑TGGCaa                                                                                                                             >  2:1485975/1‑139 (MQ=255)
               aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGGAAAAAAAC‑TGGCGTaa                                                                                                                           >  2:1081035/1‑140 (MQ=255)
                     aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATaacaaaca                                                                                                                     <  1:166227/140‑1 (MQ=255)
                       tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑TGGGATAaaaaaaaaa                                                                                                                   >  2:1010117/1‑139 (MQ=255)
                       tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑TGGCATAacaaaaaaa                                                                                                                   >  2:166227/1‑139 (MQ=255)
                         aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTc                                                                                                                 <  1:556055/140‑1 (MQ=255)
                              aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑TGGCATAACAAACAACACCTTGt                                                                                                            >  2:884000/1‑140 (MQ=255)
                                 tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCg                                                                                                         <  2:33085/140‑1 (MQ=255)
                                    cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGg‑ag                                                                                                     <  1:620570/140‑1 (MQ=255)
                                    cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGg‑ag                                                                                                     <  2:840282/140‑1 (MQ=255)
                                    cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGg‑ag                                                                                                     >  1:203083/1‑140 (MQ=255)
                                      caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGGAAAAAAAG‑TGGCATAACAAAAAACTCCTTGTCCGG‑AGaa                                                                                                   >  2:320427/1‑140 (MQ=255)
                                        ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAG‑TGGCATAAAAAACAAATCCTTGTCCGG‑GGAAcc                                                                                                 >  2:720679/1‑140 (MQ=255)
                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACG‑AGGCATAACAAAAAACACCCTGTCCGG‑AGAACCCCaaaa                                                                                           >  2:1167217/1‑138 (MQ=255)
                                              aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑AGGCATAAAAAAAAACCCCTTGTCCGG‑AGAACCCCAACg                                                                                           >  2:1438710/1‑140 (MQ=255)
                                                cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACA‑TGGCATAAAAAAAAACTCCCTGTCCGG‑GGAAACCCAACggg                                                                                         >  2:1370443/1‑140 (MQ=255)
                                                cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACA‑AGGCATAAAAAAAAAAACCCTTTCCGG‑AGAACCCCAACcgg                                                                                         >  2:1186606/1‑140 (MQ=255)
                                                cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAA‑AGGCATAAAAAAAAACTCCTTGTCCGG‑GGAACCCCAACggg                                                                                         >  2:419507/1‑140 (MQ=255)
                                                cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACG‑GGGCATAACAAAAAACCCCTTTTCCGG‑AGAAACCCCACggg                                                                                         >  1:421226/1‑140 (MQ=255)
                                                cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑TGGCATAAAAAACAACTCCTTGTCCGG‑AGAAACCCAACggg                                                                                         >  1:139269/1‑140 (MQ=255)
                                                cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGCAAAAAAAAGCGGGGGTAAAAAAAAACCCCTT‑TCCTG‑AAAACCCCCACggg                                                                                         >  1:1190048/1‑140 (MQ=255)
                                                cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGAAAAAAAAAA‑GGGCAATACAAAAAACTCCCTCTCCCG‑AGAAACCCCACggg                                                                                         >  1:943568/1‑140 (MQ=255)
                                                cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGG‑AAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAA‑GGGCAAAAAAAAAAACCCCTTTTCCGG‑GGAACCCCAACggg                                                                                         >  2:1015390/1‑140 (MQ=255)
                                                cccAGGCTGAATCAGATCCGTCGACAGATACGCAGCCAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGAC‑GGAGCAAAAAACG‑GGGCACAACAAAAAACTCCTTGTACGGCAGACCCCCAGCgg                                                                                          >  2:130785/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACG‑TGGCATAAAAAAAAACTCCTTTTCCGG‑GGAACCCCCACcggg                                                                                        >  1:396799/1‑140 (MQ=255)
                                                 ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAA‑TGGCATAACAAAAAACACCTTGTCCGG‑AGGACCCCAACgggg                                                                                        >  2:1415667/1‑140 (MQ=255)
                                                     gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGaaaa                                                                                    <  1:1010117/140‑1 (MQ=255)
                                                     gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAG‑TGGGATAACAAAAAACTCCCTGTCCGG‑AGAACCCCAACCGGGaaaa                                                                                    >  1:153009/1‑140 (MQ=255)
                                                     gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑TGGCATAAAAAACAACCCCCTGTCCGG‑GGAACCCCAACCGGGgaaa                                                                                    >  2:1128177/1‑140 (MQ=255)
                                                     gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAA‑GGGCATAAAAAAAAACACCTTGTCCGG‑AGAACCCCAACGGGGaaaa                                                                                    >  2:82870/1‑140 (MQ=255)
                                                       tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACg                                                                                  <  1:588994/140‑1 (MQ=255)
                                                       tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACg                                                                                  <  2:803927/140‑1 (MQ=255)
                                                       tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACg                                                                                  <  2:1029692/140‑1 (MQ=255)
                                                       aggATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACg                                                                                  <  1:367832/139‑1 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACC‑CGGCATAACAAACAACTCCCTGTCCGG‑AGAACCCCCACCGGGAAAACGaa                                                                                >  2:1195611/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAG‑TGGCATAACAAACAACTCCCTTTCCGG‑AGAACCCCAACGGGGGAAAAGaa                                                                                >  1:1137332/1‑140 (MQ=255)
                                                         gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑TGGCATAACAAAAAACTCCTTGTCCCG‑AGAACCCCAACGGGGAAAAAGaa                                                                                >  2:818439/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGaaa                                                                               <  1:295401/140‑1 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAG‑TGGGAAAACAAAAAAATCCTTGTTCGG‑AGAAACCCAACGGGGgaaaaaaaa                                                                               >  2:880758/1‑135 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACG‑TGGGATAACAAACAACTCCTTGTCCGG‑GGAAACCCCACGGGGGAAAAGaaa                                                                               >  1:152164/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACG‑TGGCATAAAAAAAAACTCCTTTTCCGG‑AGGAACCCAACGGGGGAAAAGaaa                                                                               >  1:1089994/1‑140 (MQ=255)
                                                          aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAA‑CGGGTTAACAAAAAAAACCCTGTCCCG‑GGAACACCCACGGGGGAAACGaaa                                                                               >  2:782676/1‑140 (MQ=255)
                                                               aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGaaaa                                                                                    >  1:1402102/1‑130 (MQ=255)
                                                                tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAAt                                                                         >  1:36938/1‑140 (MQ=255)
                                                                 ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATa                                                                        <  2:755612/140‑1 (MQ=255)
                                                                 ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATa                                                                        <  2:312422/140‑1 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACg                                                                                  <  2:1247977/128‑1 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACg                                                                                  >  1:1247977/1‑128 (MQ=255)
                                                                   gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAG‑TGGCATAAAAAAAAACTCCTTTTCCGG‑AGAACCCCCACGGGGGAAAAAAAATTCAATAcc                                                                      >  2:11883/1‑140 (MQ=255)
                                                                    tCGACGGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGTGAAAAAAACG‑CGGACTAAAAAAAAACTCCTTGTCCCG‑AGAACCCCTACCGCGAGAACGAAAGTCAATaaaa                                                                     >  2:841886/1‑137 (MQ=255)
                                                                    tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACG‑GGGGAGAAAAAAAAACCTCTTGTTCGG‑GGGAACCCAACGGGGGAAAAGAAAATTTATAcct                                                                     >  2:367832/1‑139 (MQ=255)
                                                                    tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑CGGCATAACAAACAACTCCTCGTCCGG‑AGGACCCCCACGGGGGAAACGAAAATCAATACCg                                                                     >  2:1168698/1‑140 (MQ=255)
                                                                    tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑CGGCATAAAAAAAAACTCCCTTTCCGG‑GGAACCCCCACCGGGAAAAAGAAAATTAATaacc                                                                     >  2:1449916/1‑137 (MQ=255)
                                                                    tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑AGGCATAAAAAAAAAATCCTTTTCCCG‑GGAACCCCAACGGGGGAAAAGAAAATCAATAcac                                                                     >  2:234596/1‑138 (MQ=255)
                                                                     cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGt                                                                    <  2:1142232/140‑1 (MQ=255)
                                                                           aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAGCAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                              <  1:419740/140‑1 (MQ=255)
                                                                                 agcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGa                                                        <  1:1081035/140‑1 (MQ=255)
                                                                                   caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGGAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                      >  1:737131/1‑140 (MQ=255)
                                                                                   caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                      <  2:1052836/140‑1 (MQ=255)
                                                                                     aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  1:705779/140‑1 (MQ=255)
                                                                                     aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  1:1260911/140‑1 (MQ=255)
                                                                                     aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑AGGCATAAAAAAAAAAACCTTGTCCGG‑AGAAACCCAACGGGGAAAACAAAAATTAAAACCCCCGGGAATGACGaaaag                                                    >  2:1260911/1‑138 (MQ=255)
                                                                                        tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                 <  1:111344/140‑1 (MQ=255)
                                                                                        tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                 <  2:568349/140‑1 (MQ=255)
                                                                                           tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑AGGCAAAAAAAACAACTCCTTTTCCGG‑AGAAACCCAACGGGGGAAAAGAAAATCAATAACCTCGGGAAAGACGAAAAGCAgggg                                              >  2:1481017/1‑138 (MQ=255)
                                                                                              gaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  1:301828/139‑1 (MQ=255)
                                                                                              aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  1:824537/140‑1 (MQ=255)
                                                                                              aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  2:389062/140‑1 (MQ=255)
                                                                                                aaTCAACGCCATCGGGAAAAACAGCGCGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                         <  2:779858/140‑1 (MQ=255)
                                                                                                  tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAG‑GGGCATAACAAACAACTCCTTTTTCGG‑GGAACCCCCACGGGGGAAAAGAAAATCAATAACCTCGGGAATGACGAAAAGCAGGGGAGAAggg                                       >  2:294526/1‑140 (MQ=255)
                                                                                                  tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAC‑TGGCATAACAAAAAACACCTTTTCCGG‑AGAACCCCAACGGGGGAAAAGAAAATCAAAACCGTCGGGAAAGAAGAAAAGCAGGGGAGAAggg                                       >  2:743496/1‑140 (MQ=255)
                                                                                                  tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑GGGCCTAACAAAAAACTCCTTGTCCGG‑GGAACCCCCACGGGGAAAAAGAAAATCAAAACCCCCGGGGATGACGAAAAGCAGGGGAGAAggg                                       >  2:314074/1‑140 (MQ=255)
                                                                                                   cAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGc                                      <  1:1485975/140‑1 (MQ=255)
                                                                                                     aCGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                    <  1:320427/140‑1 (MQ=255)
                                                                                                      cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑GGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCCACGGGGGAAACGAAAATCAATAACGTCGGTAATGACGAAAAGCAGGGGAGAAAGGCaaa                                   >  2:27850/1‑139 (MQ=255)
                                                                                                        ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:1167217/140‑1 (MQ=255)
                                                                                                        ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:750182/140‑1 (MQ=255)
                                                                                                        ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAC‑TGGCGTAAAAAACAAATCCTTTTCCCG‑AGGACCCCAAAGGGGGAAAAGAAAATTAAAAACGTCGGGAAGTACGAAAAGCAGGGGGGAAAGGccaaca                                 >  2:109522/1‑135 (MQ=255)
                                                                                                          aTCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAG‑TGGGATAAAAAAAAAACCCTTGTCCGG‑GGAAACCCAACCGGGAAAACGAAAATCAAAAACGTCGGGAATGACGAAAGGCAGGGGGGAAGGGGAACgagc                               >  2:301828/1‑139 (MQ=255)
                                                                                                              ggAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGc                           <  2:36938/140‑1 (MQ=255)
                                                                                                              ggAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGc                           <  1:1481017/140‑1 (MQ=255)
                                                                                                                aaaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  2:552183/140‑1 (MQ=255)
                                                                                                                  aaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt                       <  1:715681/140‑1 (MQ=255)
                                                                                                                  aaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt                       <  1:1449916/140‑1 (MQ=255)
                                                                                                                    aCAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGt                     <  2:737131/140‑1 (MQ=255)
                                                                                                                       gCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt                  <  2:1137332/140‑1 (MQ=255)
                                                                                                                        cGTGGCGGCATGGC‑GGGTAAAAAAAAG‑TGGCATAACAAAAAACTCCTTGTCCGG‑AGAACCCCAACGGGGGAAAAGAAAATTAATACCGTCGGGAATGGCGAAAGGCAGGGGAGAAGGGGAAAGAGACTGCAAAAGTACTg                 >  2:75563/1‑140 (MQ=255)
                                                                                                                         gTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAAACCCAACGGGGGAAAAGAAAATCAAAAACGTCGGGAATGACGAAAGGCAGGGGAGAAGGGGAACGAAAATGCAAAAGTACTGa                >  2:249216/1‑140 (MQ=255)
                                                                                                                            gcggcATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAtt             <  1:294526/140‑1 (MQ=255)
                                                                                                                            gcggcATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAtt             <  1:27850/140‑1 (MQ=255)
                                                                                                                                   ggC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAATGAGACTGCAAATGTACTGAATTTCATGTa      <  1:743496/140‑1 (MQ=255)
                                                                                                                                   ggC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:153009/140‑1 (MQ=255)
                                                                                                                                        ggTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa  <  2:1281982/140‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                           
AGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568367‑4568641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑