BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,288,091	C→T	P110S (CCG→TCG)	nrfA →	cytochrome c552 nitrite reductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,288,091	0	C	T	100.0%	419.7 / NA	122	P110S (CCG→TCG)	nrfA	cytochrome c552 nitrite reductase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (59/63); total (59/63)

Only 100 of 123 total aligned reads displayed.

AGCGTGTTGACGCCCTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGCCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCG  >  NC_000913/4287954‑4288226

agCGTGTTGACGCCCTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCg                                                                                                                                       >  2:1377270/1‑140 (MQ=255)

 gCGTGTTGACGCCCTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGa                                                                                                                                      >  2:985536/1‑140 (MQ=255)

    tgtTGACGCCCTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGaaaa                                                                                                                                   >  1:1099814/1‑140 (MQ=255)

    tgtTGACGCCCTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGaaaa                                                                                                                                   <  1:1100213/140‑1 (MQ=255)

     gtTGACGCCCTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGaaaaa                                                                                                                                  >  1:1541790/1‑140 (MQ=255)

      ttGACGCCCTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGaaaa                                                                                                                                   <  2:267663/138‑1 (MQ=255)

      ttGACGCCCTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAAc                                                                                                                                 >  1:911406/1‑140 (MQ=255)

      ttGACGCCCTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAAc                                                                                                                                 <  1:418245/140‑1 (MQ=255)

      ttGACGCCCTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAAc                                                                                                                                 >  2:539219/1‑140 (MQ=255)

      ttGACGCCCTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAAc                                                                                                                                 <  1:15477/140‑1 (MQ=255)

      ttGACGCCCTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAAc                                                                                                                                 >  1:743846/1‑140 (MQ=255)

        gACGCCCTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGc                                                                                                                               <  2:706049/140‑1 (MQ=255)

              cTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGa                                                                                                                         <  2:1345259/140‑1 (MQ=255)

              cTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGa                                                                                                                         <  2:1314218/140‑1 (MQ=255)

                ggCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATg                                                                                                                       >  1:573674/1‑140 (MQ=255)

                     aaGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCg                                                                                                                  <  1:1428320/140‑1 (MQ=255)

                     aaGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCg                                                                                                                  <  2:649551/140‑1 (MQ=255)

                           cACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCg                                                                                                            >  1:1350806/1‑140 (MQ=255)

                           cACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCg                                                                                                            >  2:1457771/1‑140 (MQ=255)

                               gCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATgg                                                                                                        <  1:1289914/140‑1 (MQ=255)

                               gCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATgg                                                                                                        <  1:196944/140‑1 (MQ=255)

                               gCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATgg                                                                                                        >  2:460468/1‑140 (MQ=255)

                                   gTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATg                                                                                                    >  2:80857/1‑140 (MQ=255)

                                   gTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATg                                                                                                    >  2:1536571/1‑140 (MQ=255)

                                    tGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGc                                                                                                   <  1:626360/140‑1 (MQ=255)

                                      aTCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTg                                                                                                 <  1:390601/140‑1 (MQ=255)

                                       tCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTgg                                                                                                <  1:1108749/140‑1 (MQ=255)

                                        ccTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATg                                                                                                         >  1:895815/1‑130 (MQ=255)

                                        ccTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATg                                                                                                         <  2:895815/130‑1 (MQ=255)

                                              ggCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATg                                                                                                         <  1:309562/124‑1 (MQ=255)

                                              ggCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCt                                                                                                  <  2:257843/131‑1 (MQ=255)

                                              ggCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCt                                                                                                  >  1:257843/1‑131 (MQ=255)

                                              ggCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTa                                                                                         <  2:599447/140‑1 (MQ=255)

                                              ggCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTa                                                                                         >  1:1016463/1‑140 (MQ=255)

                                               gCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTaa                                                                                        <  2:233148/140‑1 (MQ=255)

                                               gCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTaa                                                                                        <  1:192660/140‑1 (MQ=255)

                                               gCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTaa                                                                                        <  1:1214999/140‑1 (MQ=255)

                                                   ggTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGc                                                                                    >  1:581572/1‑140 (MQ=255)

                                                   ggTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGc                                                                                    >  2:870144/1‑140 (MQ=255)

                                                        cccTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGa                                                                               <  2:162956/140‑1 (MQ=255)

                                                             ctcGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTgg                                                                          >  1:1065886/1‑140 (MQ=255)

                                                             ctcGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTgg                                                                          >  1:603259/1‑140 (MQ=255)

                                                             ctcGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTgg                                                                          >  1:338728/1‑140 (MQ=255)

                                                              tcGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGgc                                                                         <  1:870144/140‑1 (MQ=255)

                                                              tcGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGgc                                                                         <  2:603259/140‑1 (MQ=255)

                                                              tcGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGgc                                                                         <  1:996770/140‑1 (MQ=255)

                                                                 cgcgATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTaa                                                                                        >  1:41340/1‑122 (MQ=255)

                                                                 cgcgATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTaa                                                                                        <  2:41340/122‑1 (MQ=255)

                                                                 cgcgATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGgc                                                                         >  1:750784/1‑137 (MQ=255)

                                                                  gcgATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGt                                                                     <  2:573674/140‑1 (MQ=255)

                                                                  gcgATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGt                                                                     <  1:425567/140‑1 (MQ=255)

                                                                  gcgATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGt                                                                     <  1:480733/140‑1 (MQ=255)

                                                                  gcgATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGt                                                                     <  2:581572/140‑1 (MQ=255)

                                                                    gATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCt                                                                   <  2:743846/140‑1 (MQ=255)

                                                                    gATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCt                                                                   <  1:1340156/140‑1 (MQ=255)

                                                                     aTTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTg                                                                  <  1:1457771/140‑1 (MQ=255)

                                                                      ttACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGa                                                                 <  2:1350806/140‑1 (MQ=255)

                                                                             aaGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGaa                                                          <  1:80857/140‑1 (MQ=255)

                                                                              aGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGaaa                                                         >  1:1566243/1‑140 (MQ=255)

                                                                               gCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGaa                                                          <  2:193526/138‑1 (MQ=255)

                                                                               gCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGaa                                                          >  1:193526/1‑138 (MQ=255)

                                                                               gCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGaa                                                          <  2:374157/138‑1 (MQ=255)

                                                                               gCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGaa                                                          >  1:374157/1‑138 (MQ=255)

                                                                                ccGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGa                                                       >  2:1576611/1‑140 (MQ=255)

                                                                                ccGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTATGATCCAGAAAGa                                                       >  1:425794/1‑140 (MQ=255)

                                                                                 cgcgTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGTCCGGATGTGGCGCGTc                                                                    >  1:1420204/1‑126 (MQ=255)

                                                                                 cgcgTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGTCCGGATGTGGCGCGTc                                                                    <  2:1420204/126‑1 (MQ=255)

                                                                                   cgTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACgg                                                    <  1:985536/140‑1 (MQ=255)

                                                                                   cgTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACgg                                                    <  2:44048/140‑1 (MQ=255)

                                                                                   cgTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACgg                                                    >  2:732568/1‑140 (MQ=255)

                                                                                    gTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTc                                                                    >  2:840055/1‑123 (MQ=255)

                                                                                    gTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTc                                                                    <  1:840055/123‑1 (MQ=255)

                                                                                    gTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGc                                                   >  2:420321/1‑140 (MQ=255)

                                                                                     tGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGacgacg                                                  <  1:1377270/140‑1 (MQ=255)

                                                                                     tGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTACGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCg                                                  <  1:776563/140‑1 (MQ=255)

                                                                                        aCATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAg                                               <  2:335031/140‑1 (MQ=255)

                                                                                        aCATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAg                                               <  2:1108953/140‑1 (MQ=255)

                                                                                        aCATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGAACCAGAAAGACGGCGAAg                                               <  2:1573432/140‑1 (MQ=255)

                                                                                             cTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGc                                          <  2:913182/140‑1 (MQ=255)

                                                                                             cTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGc                                          <  1:732568/140‑1 (MQ=255)

                                                                                             cTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGc                                          <  1:460468/140‑1 (MQ=255)

                                                                                             cTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGc                                          <  2:1016463/140‑1 (MQ=255)

                                                                                                    tgtgACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTcc                                   >  2:943185/1‑140 (MQ=255)

                                                                                                     gtgACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCa                                  <  2:1541790/140‑1 (MQ=255)

                                                                                                     gtgACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCa                                  <  2:1065886/140‑1 (MQ=255)

                                                                                                     gtgACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCa                                  <  2:1566243/140‑1 (MQ=255)

                                                                                                      tgACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGc                                          >  2:1170766/1‑131 (MQ=255)

                                                                                                      tgACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGc                                          <  1:1170766/131‑1 (MQ=255)

                                                                                                      tgACCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCAc                                 >  2:125258/1‑140 (MQ=255)

                                                                                                        aCCGATGTGCGTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACgg                               >  1:1117318/1‑140 (MQ=255)

                                                                                                                  gTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTc                                    <  1:325258/125‑1 (MQ=255)

                                                                                                                  gTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTc                                    >  2:325258/1‑125 (MQ=255)

                                                                                                                  gTGAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGgcg                     >  1:895767/1‑140 (MQ=255)

                                                                                                                    gAAACCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGgcgcg                   >  2:402600/1‑140 (MQ=255)

                                                                                                                       aCCCTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCgcgg                <  1:943185/140‑1 (MQ=255)

                                                                                                                         ccTGCGTACCGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCgcggcg              >  2:628826/1‑140 (MQ=255)

                                                                                                                                  cGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGaaa     >  2:782420/1‑140 (MQ=255)

                                                                                                                                  cGGTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGaaa     >  2:1291792/1‑140 (MQ=255)

                                                                                                                                    gTGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATc   <  1:782420/140‑1 (MQ=255)

                                                                                                                                     tGCGTCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCg  >  2:1325597/1‑140 (MQ=255)

AGCGTGTTGACGCCCTGGCGGAAGATCCACGGCTGGTGATCCTGTGGGCGGGGTATCCCTTCTCGCGCGATTACAACAAGCCGCGTGGACATGCTTTTGCTGTGACCGATGTGCGTGAAACCCTGCGTACCGGTGCGCCGAAAAACGCTGAAGATGGTCCGCTACCGATGGCATGCTGGAGTTGTAAAAGCCCGGATGTGGCGCGTCTGATCCAGAAAGACGGCGAAGATGGCTACTTCCACGGTAAATGGGCGCGCGGCGGTCCGGAAATCG  >  NC_000913/4287954‑4288226

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`