BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,560,455	+G	pseudogene (151/758 nt)	glpR ←	DNA‑binding transcriptional repressor GlpR

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,560,455	1	.	G	100.0%	515.6 / NA	131	pseudogene (151/758 nt)	glpR	DNA‑binding transcriptional repressor GlpR
Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (58/73); total (58/73)

Only 100 of 143 total aligned reads displayed.

GATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTG  >  NC_000913/3560316‑3560587

gATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGc                                                                                                                                       >  1:2033122/1‑140 (MQ=255)

gATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGc                                                                                                                                       >  2:790920/1‑140 (MQ=255)

gATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGc                                                                                                                                       >  1:16458/1‑140 (MQ=255)

 aTAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGcg                                                                                                                                      <  1:913588/140‑2 (MQ=255)

 aTAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGcg                                                                                                                                      <  1:558741/140‑2 (MQ=255)

     aCAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGcgcagg                                                                                                                                  >  1:1197370/1‑135 (MQ=255)

      cggCGTCGAGCCTTGGGGGTTTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGa                                                                                                                                 <  2:1633463/138‑1 (MQ=255)

      cAGCGTCGAGCCATGGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGa                                                                                                                                 <  2:1864112/140‑1 (MQ=255)

        gcgcCGACCCATGGGGGATTTGCCCCGCCANTTTNCGGGCGATGCGCTCTTTTTCTTCGGTCTNGGT‑GGNCTTGCGATCGTGCCACGGCGNGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATc                                                                                                                               <  2:1197370/140‑1 (MQ=255)

        gCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGGTGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCTAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATc                                                                                                                               >  1:2146710/1‑140 (MQ=255)

        gCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATc                                                                                                                               >  2:1455042/1‑140 (MQ=255)

        gCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATc                                                                                                                               >  1:259873/1‑140 (MQ=255)

         cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGTGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCa                                                                                                                              >  2:71692/1‑140 (MQ=255)

         cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCa                                                                                                                              >  1:1742609/1‑140 (MQ=255)

         cGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCa                                                                                                                              >  1:1019198/1‑140 (MQ=255)

           tCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAgg                                                                                                                            >  2:381192/1‑140 (MQ=255)

            cGAGCCTTGGGGGTTTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGt                                                                                                                           <  2:1742609/140‑1 (MQ=255)

              aGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGcg                                                                                                                                      <  2:1984772/127‑2 (MQ=255)

              aGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGcg                                                                                                                                      >  1:1984772/1‑126 (MQ=255)

              aGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGttt                                                                                                                         >  2:177693/1‑140 (MQ=255)

                     ggggTTTTGCCCCGCCATTTTGGGGGCGATGCGCTCTTTTTCTTGGGTCGGGGT‑GGCCTGGCAATCGTGCCAGGGCGTGTTAACGGACC‑GGAAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCg                                                                                                                  <  2:1642514/140‑1 (MQ=255)

                     ggggATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCg                                                                                                                  >  2:1956819/1‑140 (MQ=255)

                         ttttGCTCAGACTCTTTGCGGGCGTTGCTCTCTTTTTCTTCGGTCTGGGT‑GCCTTTGCGATCGTGCCACGGCGTGTTAACAGACC‑TGGACGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAg                                                                                                              <  2:2163753/139‑1 (MQ=255)

                           ttGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCt                                                                                                            >  1:186629/1‑140 (MQ=255)

                             gCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCa                                                                                                          >  2:250704/1‑140 (MQ=255)

                             gCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCa                                                                                                          >  1:2101261/1‑140 (MQ=255)

                             gCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCa                                                                                                          >  2:2080171/1‑140 (MQ=255)

                                  gCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAg                                                                                                     >  2:212603/1‑140 (MQ=255)

                                   ccACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAgg                                                                                                    <  2:1142731/140‑1 (MQ=255)

                                   ccACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAgg                                                                                                    >  2:1995689/1‑140 (MQ=255)

                                     aCTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTc                                                                                                  <  1:2080171/140‑1 (MQ=255)

                                     aCTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTc                                                                                                  <  1:278849/140‑1 (MQ=255)

                                     aCTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTc                                                                                                  <  2:2046178/140‑1 (MQ=255)

                                     aCTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTc                                                                                                  <  2:1480966/140‑1 (MQ=255)

                                                 aTGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGt                                                                                      >  1:2001329/1‑140 (MQ=255)

                                                  tGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTc                                                                                     >  1:318885/1‑140 (MQ=255)

                                                      ctctTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCg                                                                                 <  2:186629/140‑1 (MQ=255)

                                                         tttttCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGTGAATAGTCTGCGGGc                                                                              <  2:1292623/140‑1 (MQ=255)

                                                            ttctgcGGTCTGGTT‑GGCTTGGCGATGGTGCCGCGGCGTGTTAACGGAAG‑GGGAAGGTAGCGCGGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGa                                                                           <  2:1526761/140‑1 (MQ=255)

                                                              cttcGGT‑TGGGTGGGCTTTGCGTAAGGGCCAGGGCGTGTAATCTGAAC‑GGGAGGCCGCCGCCGCACCGGCAGGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACg                                                                         <  2:2146710/140‑1 (MQ=255)

                                                                tcGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGc                                                                              >  1:1145745/1‑133 (MQ=255)

                                                                  ggTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGgaga                                                                     <  2:259873/140‑1 (MQ=255)

                                                                  ggTCTGGGG‑GGCCTTGCGATCGTGCCACGGGGTGTTAACCGAAC‑GGAAGGGCGGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGgaga                                                                     <  2:1997818/140‑1 (MQ=255)

                                                                   gTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGaa                                                                    <  2:922358/140‑1 (MQ=255)

                                                                         gT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGctc                                                              >  2:888794/1‑140 (MQ=255)

                                                                               cTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GTCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCa                                                         >  2:1290490/1‑140 (MQ=255)

                                                                               cTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACg                                                                         >  1:771910/1‑124 (MQ=255)

                                                                               cTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACg                                                                         <  2:771910/124‑1 (MQ=255)

                                                                               cTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCa                                                         >  2:1172597/1‑140 (MQ=255)

                                                                               cTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCa                                                         >  1:402486/1‑140 (MQ=255)

                                                                                ttGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAg                                                        <  1:1954941/140‑1 (MQ=255)

                                                                                ttGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAg                                                        <  2:1685602/140‑1 (MQ=255)

                                                                                   cGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAg                                                        <  1:632492/137‑1 (MQ=255)

                                                                                   cGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAg                                                        >  2:632492/1‑137 (MQ=255)

                                                                                   cGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGctc                                                     >  2:2046784/1‑140 (MQ=255)

                                                                                   cGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGctc                                                     >  1:794639/1‑140 (MQ=255)

                                                                                   cGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGctc                                                     >  2:2004601/1‑140 (MQ=255)

                                                                                     ctCGTGCCCCGGCGTG‑TAACCGGACGTGGAAGGCAGCGCCGCCCCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt                                                   <  2:1019198/139‑1 (MQ=255)

                                                                                     aTCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt                                                   <  1:905794/140‑1 (MQ=255)

                                                                                     aTCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt                                                   <  2:794639/140‑1 (MQ=255)

                                                                                        gTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCgg                                                >  2:1086971/1‑140 (MQ=255)

                                                                                         tGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGt                                               >  1:292851/1‑140 (MQ=255)

                                                                                          gCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTa                                              <  2:165851/140‑1 (MQ=255)

                                                                                          gCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTa                                              <  1:297446/140‑1 (MQ=255)

                                                                                          gCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTa                                              <  1:381192/140‑1 (MQ=255)

                                                                                          gCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTa                                              <  2:1466636/140‑1 (MQ=255)

                                                                                           ccACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTAc                                             <  1:71692/140‑1 (MQ=255)

                                                                                           ccACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTAc                                             <  1:1455042/140‑1 (MQ=255)

                                                                                           ccACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTAc                                             <  1:790920/140‑1 (MQ=255)

                                                                                           ccACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTAc                                             <  1:1172597/140‑1 (MQ=255)

                                                                                                gCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACa                                        <  1:169917/140‑1 (MQ=255)

                                                                                                 cGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt                                                   >  2:2160510/1‑128 (MQ=255)

                                                                                                 cGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCtt                                                   <  1:2160510/128‑1 (MQ=255)

                                                                                                 cGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACAt                                       <  1:2046784/140‑1 (MQ=255)

                                                                                                  gtgtTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTAc                                             <  1:460929/133‑1 (MQ=255)

                                                                                                  gtgtTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTAc                                             >  2:460929/1‑133 (MQ=255)

                                                                                                   ttttAACTGACC‑TGGAGGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATaa                                     <  1:846768/138‑1 (MQ=255)

                                                                                                   tgtTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATaa                                     >  2:1187849/1‑140 (MQ=255)

                                                                                                   tgtTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATAGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATaa                                     <  1:219835/140‑1 (MQ=255)

                                                                                                    gtTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAAc                                    >  2:1565604/1‑140 (MQ=255)

                                                                                                       aaCCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCct                                 <  1:1086971/140‑1 (MQ=255)

                                                                                                        aCCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCctg                                <  1:1971504/140‑1 (MQ=255)

                                                                                                              agtGGAAGGCAGCGCCGCACCGCCATGAT‑GGCGGAGGATCAGGTTTTGCTCGGCCAGCTCCTTGAGGTCGCGGCGAATGGTCTGCGGGCTGGCGGTGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGtt                           >  2:2029673/3‑140 (MQ=255)

                                                                                                                  aaaGGCAGCGCGGAACCGCCATGATGGGG‑CAGGATCAGGTTTTGCTCCGCCCGCTCATTGAGGTCGCGGCGAATAGTCTTCGGGTTGACGGAGAAATTCGCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAAc                       <  2:521763/139‑1 (MQ=255)

                                                                                                                    aGGCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAAc                       >  1:1044201/1‑138 (MQ=255)

                                                                                                                     ggCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                    <  2:292851/140‑1 (MQ=255)

                                                                                                                     ggCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                    <  2:318885/140‑1 (MQ=255)

                                                                                                                     ggCAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                    <  2:364654/140‑1 (MQ=255)

                                                                                                                       cAGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGtt                  >  2:472751/1‑140 (MQ=255)

                                                                                                                        aGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTCCCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                    <  2:523626/137‑1 (MQ=255)

                                                                                                                        aGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                    >  1:523626/1‑137 (MQ=255)

                                                                                                                        aGCGCCGCACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTc                 >  2:1727581/1‑140 (MQ=255)

                                                                                                                          cgccgcACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAg                    <  1:986282/135‑1 (MQ=255)

                                                                                                                          cgccgcACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTc                 >  2:246315/1‑138 (MQ=255)

                                                                                                                          cgccgcACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTc                 <  1:246315/138‑1 (MQ=255)

                                                                                                                          cgccgcACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGa               <  1:250704/140‑1 (MQ=255)

                                                                                                                          cgccgcACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGa               <  1:199506/140‑1 (MQ=255)

                                                                                                                          cgccgcACCGCCATGAT‑GGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGa               >  2:199506/1‑140 (MQ=255)

                                                                                                                                      atgat‑gGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTtgt   <  1:472751/140‑1 (MQ=255)

                                                                                                                                       tgat‑gGCGCAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTtgtg  <  1:1995689/140‑1 (MQ=255)

GATAAACAGCGTCGAGCCATTGGGGATTTGCTCCGCCACTTTGCGGGCGATGCGCTCTTTTTCTTCGGTCTGGGT‑GGCCTTGCGATCGTGCCACGGCGTGTTAACCGAAC‑TGGAAGGCAGCGCCGCACCGCCATGAT‑GGC‑CAGGATCAGGTTTTGCTCCGCCAGCTCATTGAGGTCGCGGCGAATAGTCTGCGGGCTGACGGAGAAATGCTCTACCAGCTCTTCGGTACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTG  >  NC_000913/3560316‑3560587

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`