| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,101,507 | 0 | T | G | 30.1% | 121.3 / 13.5 | 73 | intergenic (+77/‑183) | sodA/kdgT | superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base T (12/39); new base G (22/0); total (34/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.14e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG > NC_000913/4101369‑4101646 | aaGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGtt < 1:1186085/140‑1 (MQ=255) agagTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGgtt > 1:1677994/1‑140 (MQ=255) agTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttt > 1:1548630/1‑140 (MQ=255) agTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGgtttt > 1:852660/1‑140 (MQ=255) ttCTGGTACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGTGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGgtttttt > 1:1396309/1‑140 (MQ=255) ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttttt > 2:901344/1‑140 (MQ=255) ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttttt > 2:1135563/1‑140 (MQ=255) ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttttt > 1:1805672/1‑140 (MQ=255) ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttt > 2:1300793/1‑138 (MQ=255) ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGttttt < 1:1300793/138‑1 (MQ=255) ttCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGgtttttt > 1:931270/1‑140 (MQ=255) tCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGG‑GGggtttttt > 1:2163167/1‑139 (MQ=255) cTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGgtttttttt > 1:626301/1‑138 (MQ=255) gAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGAt < 1:901344/140‑1 (MQ=255) tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTTTGATCAAtt > 1:428629/1‑140 (MQ=255) tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAAtt > 2:973291/1‑140 (MQ=255) tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTGATCAAtt > 1:669540/1‑140 (MQ=255) aaCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCaaa < 2:931270/140‑1 (MQ=255) cTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAAt < 1:973291/140‑1 (MQ=255) gggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATaa < 2:1178555/140‑1 (MQ=255) gggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATaa < 2:2119779/140‑1 (MQ=255) ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTTATTCAATTTTAaaaaaa > 2:1082670/1‑140 (MQ=255) ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGGTCAATTTCAAAATaaa > 1:1738733/1‑140 (MQ=255) ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATaaa < 1:2087818/140‑1 (MQ=255) ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTGATCAAATTTaaaaaaaa > 2:55428/1‑140 (MQ=255) ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTAAAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTtgtg < 1:1653512/123‑1 (MQ=255) ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTAAAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTtgtg > 2:1653512/1‑123 (MQ=255) gACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTTAaaaaaaaa > 2:2189770/1‑140 (MQ=255) gACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAAATTTAaaaaaaaa > 2:247348/1‑140 (MQ=255) gACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATAATTTGCCGCCTGCTGTAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCaa > 1:2070763/1‑127 (MQ=255) gACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATAATTTGCCGCCTGCTGTAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCaa < 2:2070763/127‑1 (MQ=255) aCGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATTAAATTTTAAATaaaaa > 2:540241/1‑140 (MQ=255) aCGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTGTTCAAATTTAAAATaaaaa > 2:801056/1‑140 (MQ=255) cGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGC‑GGGTTTTTTGTGTTCAATTTTAAAATaaaaaa > 2:658301/1‑139 (MQ=255) aaGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAAt < 2:1704348/132‑1 (MQ=255) aaGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTTGTCAATTTTAAAATAAAAACaa > 2:1895140/1‑140 (MQ=255) aaGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTTAAAATaaaaaaaa > 2:1026625/1‑140 (MQ=255) aaGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTGATCAATTTCAAAAt > 1:1704348/1‑132 (MQ=255) gcagcGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATg < 1:247348/140‑1 (MQ=255) cagcGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTCAAAATAAAAACAAAGa > 1:1420695/1‑140 (MQ=255) cACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat < 1:1082670/140‑1 (MQ=255) cGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAAAAATGATCCGataa > 1:1938104/1‑140 (MQ=255) cGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTTATTAATTTTAAAATAAAAAAAATGATTAGataa > 2:895958/1‑140 (MQ=255) ggcgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGTTCAATTTTAAAATAAAAAAAAAAATCCGataaaaaaaaaa > 2:526845/1‑140 (MQ=255) cgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACa < 1:1026625/140‑1 (MQ=255) aaaaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGc < 2:1938104/140‑1 (MQ=255) aaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGt < 1:1032675/140‑1 (MQ=255) aaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGt < 1:1813415/140‑1 (MQ=255) aaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGt < 1:1905160/140‑1 (MQ=255) tttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAt < 1:526845/140‑1 (MQ=255) ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtg < 1:2112800/140‑1 (MQ=255) ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtg < 2:1281292/140‑1 (MQ=255) ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtg < 2:1548630/140‑1 (MQ=255) tGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtgt > 1:185632/1‑140 (MQ=255) ccgccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTCAAAATAAAAAAAAAGATCCGATAAAAATAAAAAAGCGGTTCAATTTATGTgg > 2:2112800/1‑140 (MQ=255) gccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGtt < 2:1589386/140‑1 (MQ=255) ccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGttt > 1:1139376/1‑140 (MQ=255) ctgctgCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTGATCAATTTCAAAATAAAAAAAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGtttt > 1:1681449/1‑140 (MQ=255) ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt < 1:364018/140‑1 (MQ=255) ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt < 1:360212/140‑1 (MQ=255) ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt < 1:660532/140‑1 (MQ=255) ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt < 2:1738733/140‑1 (MQ=255) aggcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt < 1:1093754/138‑1 (MQ=255) gcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCa < 1:1147257/140‑1 (MQ=255) aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTa < 1:540241/140‑1 (MQ=255) aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTa < 2:185632/140‑1 (MQ=255) aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTa < 2:1139376/140‑1 (MQ=255) aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGC‑GGTTTTTTTGTGGTCAATTTTCAAATAAAAAAAATGATCCGGTAAAAATAAAAAAGCGGTTTAATTTATGTGGGTTTTATCACttttt > 2:1147257/1‑139 (MQ=255) gTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGa < 1:1712835/140‑1 (MQ=255) tataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGAt < 1:1135563/140‑1 (MQ=255) tataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGGTCAATTTTAAAAAAAAAACAAAGATCCGATAAAAAAAAAAAAACGTTTTCATTGATGTGGTTTTTATTACTTTTTTTgtt > 2:1093754/1‑138 (MQ=255) gCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaat < 1:658301/140‑1 (MQ=255) gCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTCAAAATAAAAAAAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaat > 1:1459825/1‑140 (MQ=255) cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTTAAAAAAAAAACAAAGATCCGATAAAAAAAAAAAAGCGTTTTAATTTATGTGGTTTTTATCACTTTTTTTGATTAaatga > 2:7513/1‑140 (MQ=255) cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaatga > 1:1897673/1‑140 (MQ=255) atatCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGa < 2:688997/129‑1 (MQ=255) atatCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGa > 1:688997/1‑129 (MQ=255) atatCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTTAAAAAAAAAACAAAGATCCGATAAAAATAAAACAACGTTTCAATTGATGTGGTTTTTGTCACTTTTATTGATTAaatgaatg > 2:1933742/1‑140 (MQ=255) atatCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTCAAAATAAAAAAAAAGATCCGATAAAAATAAAACAGCGTTTTAATTGATGTGGGTTTTATCACTTTTATTTATTAaatgaatg > 2:1678259/1‑140 (MQ=255) tAAAAAATGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAAAAAAACAGCGTTTCAATTGATGTGGGTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTc > 1:5859/1‑140 (MQ=255) aaaaaaTGAACCATCGCCAACGGCGGT‑GGGTTTTTTTTGATCAAATTTAAAATAAAAAAAATGATCCGATAAAAATAAAACAACGGTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCg > 2:1382890/1‑140 (MQ=255) aaaaTGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt < 1:55428/140‑1 (MQ=255) aaCCATCGCCAACGGCGGT‑GGTTTTTTTTTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAAAAGCGGTTCAATTGATGTGGGTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATc > 1:1343165/1‑140 (MQ=255) ccATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCaa < 1:1933742/140‑1 (MQ=255) ccATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCaa < 2:1722364/140‑1 (MQ=255) aaCGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATg < 2:1805672/140‑1 (MQ=255) cggcggT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCt < 2:626301/140‑1 (MQ=255) tttttttGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAgg < 2:597608/140‑1 (MQ=255) | AAGAGTTCTGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGT‑GGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGG > NC_000913/4101369‑4101646 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |