Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,638,416 IS1 (–) +9 bp coding (21‑29/189 nt) ynfQ ← Qin prophage; protein YnfQ

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1638416 =0 (0.000)51 (0.920) 40/274 0.3 100% coding (29/189 nt) ynfQ Qin prophage; protein YnfQ
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region
* ? NC_000913 = 16384240 (0.000)48 (0.860) 34/276 0.5 100% coding (21/189 nt) ynfQ Qin prophage; protein YnfQ
?NC_000913 1978503 = NA (NA)noncoding (768/768 nt) IS1 repeat region

Only 100 of 110 total aligned reads displayed.

CAGACGGCTGGCATTTAAGTATTGTGAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAGTTAATGTTTTGAAATCGTTGCT  >  NC_000913/1638277‑1638553
                                                                                                                                           |                                                                                                                                         
cAGACGGCTGGCATTTAAGTATTGTGAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACg                                                                                                                                           <  1:121095/140‑1 (MQ=255)
   atgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGc                                                                                                                                        <  1:198572‑M1/4‑1 (MQ=255)
   aCGGCTGGCATTTAAGTATTGTGAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACg                                                                                                                                           <  2:916573/137‑1 (MQ=255)
   aCGGCTGGCATTTAAGTATTGTGAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGc                                                                                                                                        >  1:367839/1‑140 (MQ=255)
   aCGGCTGGCATTTAAGTATTGTGAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGc                                                                                                                                        <  2:91560/140‑1 (MQ=255)
   aCGGCTGGCATTTAAATATTGTGAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACg                                                                                                                                           >  1:916573/1‑137 (MQ=255)
    tgtccggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCa                                                                                                                                       <  1:557239‑M1/5‑1 (MQ=255)
    cGGCTGGCATTTAAGTATTGTGAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCa                                                                                                                                       <  2:367839/140‑1 (MQ=255)
     ggCTGGCATTTAAGTATTGTGAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCAt                                                                                                                                      >  2:487999/1‑140 (MQ=255)
     ggCTGGCATTTAAGTATTGTGAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCAt                                                                                                                                      <  1:272579/140‑1 (MQ=255)
        tGGCATTTGAGTATTGTGAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTa                                                                                                                                   >  1:703431/1‑140 (MQ=255)
         ggcggtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTaa                                                                                                                                  >  2:914189‑M1/131‑140 (MQ=255)
             gtgcttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccggg                                                                                                                                         >  2:198143‑M1/127‑129 (MQ=255)
                cttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAat                                                                                                                           >  1:720256‑M1/124‑140 (MQ=255)
                 ttttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAata                                                                                                                          >  2:873549‑M1/123‑140 (MQ=255)
                  gTATTGTGAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgact                                                                                                                         <  2:725072‑M1/140‑11 (MQ=255)
                   ttgccgttacgcaccaccccgtcagtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATg                                                                                                                        >  1:419068‑M1/121‑140 (MQ=255)
                    aTTGTGAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactcc                                                                                                                       <  1:98784‑M1/140‑13 (MQ=255)
                    aTTGTGAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactcc                                                                                                                       <  2:445115‑M1/140‑13 (MQ=255)
                        tgAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATc                                                                                                                                     >  2:643006/1‑122 (MQ=255)
                        tgAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATc                                                                                                                                     <  1:643006/122‑1 (MQ=255)
                        tgAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaact                                                                                                                   >  2:681650‑M1/1‑124 (MQ=255)
                               ttatCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgat                                                                                                            >  1:352660‑M1/1‑117 (MQ=255)
                                tatCAAATGTAATCATCATTGATTTATAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgata                                                                                                           <  1:792488‑M1/140‑25 (MQ=255)
                                tatCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgata                                                                                                           <  2:838473‑M1/140‑25 (MQ=255)
                                     aaTGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgtt                                                                                                      <  1:487999‑M1/140‑30 (MQ=255)
                                           gtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaagcagtaagtttgcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCaaa                                                                                                >  2:157112‑M1/97‑140 (MQ=255)
                                            tcatcaTTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgtt                                                                                               <  1:305072‑M1/140‑37 (MQ=255)
                                            tcatcaTTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgtt                                                                                               >  2:305072‑M1/1‑104 (MQ=255)
                                            tagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAg                                                                                               >  2:73788‑M1/96‑140 (MQ=255)
                                              gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAgcg                                                                                             <  1:285450‑M1/47‑1 (MQ=255)
                                              gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAgcg                                                                                             >  1:135428‑M1/94‑140 (MQ=255)
                                                tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGcc                                                                                           >  2:557239‑M1/92‑140 (MQ=255)
                                                tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGcc                                                                                           >  2:625676‑M1/92‑140 (MQ=255)
                                                catTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgtt                                                                                               >  1:898248‑M1/1‑100 (MQ=255)
                                                catTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgtt                                                                                               <  2:898248‑M1/136‑37 (MQ=255)
                                                    gATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataat                                                                                       <  1:102063‑M1/140‑45 (MQ=255)
                                                      ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccAGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACa                                                                                     <  1:155946‑M1/55‑1 (MQ=255)
                                                        tACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgccc                                                                                   >  1:465242‑M1/1‑92 (MQ=255)
                                                        tACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgccc                                                                                   <  2:703431‑M1/140‑49 (MQ=255)
                                                           aaaaGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat                                                                                <  2:352660‑M1/140‑52 (MQ=255)
                                                            acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCAc                                                                                         <  1:275230‑M1/51‑1 (MQ=255)
                                                            acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCAc                                                                                         >  2:275230‑M1/80‑130 (MQ=255)
                                                               gctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCg                                                                            <  2:664226‑M1/64‑1 (MQ=255)
                                                                  gatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCa                                                                         >  2:92415‑M1/74‑140 (MQ=255)
                                                                  aCATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttg                                                                         <  1:98726‑M1/140‑59 (MQ=255)
                                                                    tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAgg                                                                       >  1:918863‑M1/72‑140 (MQ=255)
                                                                    tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAgg                                                                       >  1:851292‑M1/72‑140 (MQ=255)
                                                                     agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCa                                                                         >  1:29958‑M1/71‑137 (MQ=255)
                                                                     agaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCa                                                                         <  2:29958‑M1/67‑1 (MQ=255)
                                                                          ccccGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcag                                                                 >  1:164933‑M1/1‑74 (MQ=255)
                                                                          ccccGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                    <  1:925534‑M1/137‑64 (MQ=255)
                                                                          ccccGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg                                                                    >  2:925534‑M1/1‑74 (MQ=255)
                                                                          cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCttt                                                                 <  2:211715‑M1/75‑1 (MQ=255)
                                                                           agaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTa                                                                >  1:664226‑M1/65‑140 (MQ=255)
                                                                               gccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTc                                                            <  1:376482‑M1/80‑1 (MQ=255)
                                                                               aaaGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcca                                                            <  2:799627‑M1/140‑72 (MQ=255)
                                                                                aaGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac                                                           <  2:465242‑M1/140‑73 (MQ=255)
                                                                                         tGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttga                                                  >  1:389060‑M1/1‑59 (MQ=255)
                                                                                             tcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCa                                              >  2:304844‑M1/47‑140 (MQ=255)
                                                                                                 aCATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca                                          <  1:681650‑M1/140‑90 (MQ=255)
                                                                                                   acaccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGAGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCa                                        <  1:293392‑M1/100‑1 (MQ=255)
                                                                                                    tCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcg                                       >  2:3445‑M1/1‑48 (MQ=255)
                                                                                                      ccatcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACt                                     <  1:197661‑M1/103‑1 (MQ=255)
                                                                                                         tcatacactaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACCACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTcc                                  >  1:297092‑M1/35‑140 (MQ=255)
                                                                                                             gatgTTCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtc                              >  1:484624‑M1/1‑39 (MQ=255)
                                                                                                               actaaatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATtc                            <  1:500336‑M1/112‑1 (MQ=255)
                                                                                                                  tCTATACTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagc                         >  2:121927‑M1/1‑34 (MQ=255)
                                                                                                                   aatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCGTGATTCTCAg                        <  2:654850‑M1/116‑1 (MQ=255)
                                                                                                                   aatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAg                        <  2:187104‑M1/116‑1 (MQ=255)
                                                                                                                   aatcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAg                        <  1:364608‑M1/116‑1 (MQ=255)
                                                                                                                    atcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAGt                       <  2:264517‑M1/117‑1 (MQ=255)
                                                                                                                    atcagtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAGt                       <  2:95434‑M1/117‑1 (MQ=255)
                                                                                                                     ataCTGGGAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccaattttgagaacgacagcgacttccgtcccagccgt                      >  1:554370‑M1/1‑31 (MQ=255)
                                                                                                                       agtaagttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAGTTaa                    >  1:187104‑M1/21‑140 (MQ=255)
                                                                                                                           ggAACCATGACAACACGGGCGTCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccagg                >  2:770116‑M1/1‑25 (MQ=255)
                                                                                                                           ggAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccagg                >  1:904616‑M1/1‑25 (MQ=255)
                                                                                                                           ggAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccagg                >  2:274932‑M1/1‑25 (MQ=255)
                                                                                                                           ggAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccagg                >  1:714558‑M1/1‑25 (MQ=255)
                                                                                                                           ggAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccagg                >  1:52616‑M1/1‑25 (MQ=255)
                                                                                                                           ggAACCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtccca                           >  1:771160‑M1/1‑25 (MQ=255)
                                                                                                                           agttggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAGTTAATGtt                <  1:746734‑M1/124‑1 (MQ=255)
                                                                                                                              aCCATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcaacttccgtcccagccgtgccaggtgc             >  2:255658‑M1/1‑22 (MQ=255)
                                                                                                                               ggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAGTTAATGTTTTGa            <  1:10923‑M1/128‑1 (MQ=255)
                                                                                                                               ggcagcatcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAGTTAATGTTTTGa            <  1:111171‑M1/128‑1 (MQ=255)
                                                                                                                                cATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctg           >  1:145897‑M1/1‑20 (MQ=255)
                                                                                                                                cATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctg           >  2:435662‑M1/1‑20 (MQ=255)
                                                                                                                                cATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctg           >  1:477272‑M1/1‑20 (MQ=255)
                                                                                                                                cATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcc                   <  2:326869‑M1/132‑113 (MQ=255)
                                                                                                                                cATGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgcc                   >  1:326869‑M1/1‑20 (MQ=255)
                                                                                                                                  tGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcc         >  1:586262‑M1/1‑18 (MQ=255)
                                                                                                                                  tGACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcc         >  2:411110‑M1/1‑18 (MQ=255)
                                                                                                                                   gcatcaccGGGCCTCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAGTTAATGTTTTGAAATc        <  2:355951‑M1/132‑1 (MQ=255)
                                                                                                                                   gACAACACGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcgacttccgtcccagccgtgccaggtgctgcct        <  1:347360‑M1/140‑124 (MQ=255)
                                                                                                                                    catcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAGTTAATGTTTTGAAATCg       >  1:252747‑M1/8‑140 (MQ=255)
                                                                                                                                    catcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAGTTAATGTTTTGAAATCg       >  1:211715‑M1/8‑140 (MQ=255)
                                                                                                                                    catcaccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAGTTAATGTTTTGAAATCg       >  2:285450‑M1/8‑140 (MQ=255)
                                                                                                                                       caccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAGTTAATGTTTTGAAATCGTTg    >  1:385800‑M1/5‑140 (MQ=255)
                                                                                                                                       caccGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAGTTAATGTTTTGAAATCGTTg    <  2:732868‑M1/136‑1 (MQ=255)
                                                                                                                                         acGGGCATCTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacagcaacttccgtcccagccgtgccaggtgctgcctcagatt  <  1:255658‑M1/140‑130 (MQ=255)
                                                                                                                                           |                                                                                                                                         
CAGACGGCTGGCATTTAAGTATTGTGAAATATTATCAAATGTAATCATCATTGATTTACAAAAGATACATTTTGCCCCGAAAGGATTCATGTCAGAAACATCAAAAGATGATGTTCTATACTGGGAACCATGACAACACGGGCATCTAAAGTGAATATGGTTTGTAATATTGTCTACCTCAAAGCGCCACTACATGAACAGCGGCAGGACCTTTAGGTCCGTTCTCAATACCAAATTCAACTTCCTGATTCTCAGTTAATGTTTTGAAATCGTTGCT  >  NC_000913/1638277‑1638553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.