Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG32.8% 250.9 / 24.3 129T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (18/68);  new base G (42/0);  total (61/68)
Fisher's exact test for biased strand distribution p-value = 8.17e-20
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 133 total aligned reads displayed.

GCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568371‑4568641
                                                                                                                                     |                                                                                                                                            
gCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaa                                                                                                                                        >  1:737366/1‑140 (MQ=255)
gCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaa                                                                                                                                        >  1:1471376/1‑140 (MQ=255)
  cAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaaaa                                                                                                                                      >  2:599596/1‑139 (MQ=255)
   aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg                                                                                                                                     <  2:457801/140‑1 (MQ=255)
   aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg                                                                                                                                     <  2:1471376/140‑1 (MQ=255)
        gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa                                                                                                                                <  1:721374/140‑1 (MQ=255)
         aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCaa                                                                                                                               >  1:1192096/1‑139 (MQ=255)
          cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa                                                                                                                              <  2:716875/140‑1 (MQ=255)
          cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATa                                                                                                                              >  2:1119328/1‑140 (MQ=255)
              ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaa                                                                                                                          >  2:243278/1‑140 (MQ=255)
              ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaa                                                                                                                          <  2:1576671/140‑1 (MQ=255)
               gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATaacaaa                                                                                                                         >  1:478267/1‑140 (MQ=255)
               gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATaacaaa                                                                                                                         >  1:1098475/1‑140 (MQ=255)
                cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATaacaaaa                                                                                                                        >  1:262079/1‑139 (MQ=255)
                   tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAaacaac                                                                                                                     >  1:947477/1‑140 (MQ=255)
                   tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAaaaaaaaaa                                                                                                                     >  2:1556053/1‑139 (MQ=255)
                   tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAacaaacaaa                                                                                                                     >  1:1250037/1‑139 (MQ=255)
                      aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTc‑c                                                                                                                 <  1:258757/140‑1 (MQ=255)
                      aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTc‑c                                                                                                                 <  2:460317/140‑1 (MQ=255)
                      aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTc‑c                                                                                                                 <  1:1287580/140‑1 (MQ=255)
                          aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa                                                                                                                              >  1:1517522/1‑124 (MQ=255)
                          aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGt                                                                                                             <  2:1167656/140‑1 (MQ=255)
                           cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTc                                                                                                            <  1:914663/140‑1 (MQ=255)
                            gTACCACATTAATGATCCCAGGCT‑GATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑Cg                                                                                                         <  2:672259/140‑1 (MQ=255)
                              aCCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAATGGCGTAACAAAAAAATC‑CTTGTC‑Cgg                                                                                                        >  2:1287580/1‑140 (MQ=255)
                                cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAAAAAAAAACTC‑CTTTTC‑CGgag                                                                                                      >  1:351430/1‑140 (MQ=255)
                                  caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTc‑c                                                                                                                 <  2:1508781/128‑1 (MQ=255)
                                  caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTc‑c                                                                                                                 >  1:1508781/1‑128 (MQ=255)
                                          aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAAATC‑CTTTTC‑CGGGGAA‑CCCCCACg                                                                                           >  2:1271844/1‑140 (MQ=255)
                                          aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAACAAAAAACAC‑CTTTTC‑CCGAGAA‑cccccaaa                                                                                           >  2:1389993/1‑136 (MQ=255)
                                            cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGGATAAAAAAAAAACC‑CTTTTC‑CGGGGAA‑ACCCaaacgg                                                                                         >  1:1707307/1‑136 (MQ=255)
                                            cccAGGCTGGATCAGATCCGTCGAAAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACAC‑CTTGTC‑CCGGGAA‑CCCCCAAggg                                                                                         >  2:1536897/1‑140 (MQ=255)
                                            cccAGGCTGGATCAGATCCATCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGGAAAACAGCGTGGCGGCATGGCGGGTGAAAAAAAATGGGGTAAAAAAAAAATT‑CTTGTT‑CCGGGCA‑ACCCAACagg                                                                                         >  2:850001/1‑140 (MQ=255)
                                             ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACgggg                                                                                        >  1:142238/1‑140 (MQ=255)
                                             ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACgggg                                                                                        >  1:225752/1‑140 (MQ=255)
                                             ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAACAAAAAACTC‑CTTGTC‑CGGAGAA‑CCCCAACgggg                                                                                        >  1:22843/1‑140 (MQ=255)
                                              agggCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGa                                                                                       <  1:1001471/138‑1 (MQ=255)
                                                 gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGaaaa                                                                                    <  2:1111152/140‑1 (MQ=255)
                                                 gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAAATC‑CTTGTC‑CGGAGGA‑ACCCAACGGGGgaaa                                                                                    >  2:1598825/1‑140 (MQ=255)
                                                 gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAAAAACAC‑CTTGTC‑CGGAGAA‑ACCCCACGGGGaaaa                                                                                    >  2:1051289/1‑140 (MQ=255)
                                                   tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACg                                                                                  <  2:465963/140‑1 (MQ=255)
                                                   tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACg                                                                                  <  2:1383129/140‑1 (MQ=255)
                                                   tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACg                                                                                  <  1:1070175/140‑1 (MQ=255)
                                                     gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAAAAAAAAAAAC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGGAAAAGaa                                                                                >  2:219696/1‑140 (MQ=255)
                                                     gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGGATAACAAACAACCC‑CCTGTC‑CGGGGAA‑CCCCCACGGGGGAAAAGaa                                                                                >  2:216063/1‑140 (MQ=255)
                                                      aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGACAAAAAAGTGGCAGAACAAAAAAAGC‑CTTTTCTGGGGGAA‑CCCCACCGGGAAGAAGGaa                                                                                >  2:401568/1‑140 (MQ=255)
                                                      aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCCTAACAAAAAACTC‑CCTGTC‑CGGAGAA‑ACCCCACGGGGGAAACGaaa                                                                               >  1:868572/1‑140 (MQ=255)
                                                      aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACCC‑CTTGTC‑CGGAGAA‑CCCCCACGGGGAAAAAGaaa                                                                               >  1:962313/1‑140 (MQ=255)
                                                      aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAAATC‑CTTTTC‑CGGAGAA‑CCCCAACGGGGGAAAAGaaa                                                                               >  2:1466101/1‑140 (MQ=255)
                                                       tCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAAt                                                                              >  1:343788/1‑140 (MQ=255)
                                                          gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCa                                                                           <  1:339294/140‑1 (MQ=255)
                                                           aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCCACGGGGGAAAAGAAAATCaa                                                                          >  1:1308824/1‑140 (MQ=255)
                                                           aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAAAGGGGAAACAAAAAAACC‑CTTTTC‑CGGGAGA‑CCCCAACCGGGGAAACAAAATTcca                                                                          >  2:739381/1‑138 (MQ=255)
                                                           aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAAATC‑CTTGTC‑CGGAGAA‑CCCCCACGGGGAAAACGAAATTCaa                                                                          >  1:1527365/1‑140 (MQ=255)
                                                           aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCCTAAAAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGGAAAAGAAAATCaa                                                                          >  2:1029788/1‑140 (MQ=255)
                                                           aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAACGGCATAAAAAACAAATC‑CTTGTC‑CGGAGGA‑CCCCAACCGGGGAAACGAAAATCaa                                                                          >  2:1327753/1‑140 (MQ=255)
                                                            tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAAt                                                                         >  1:113268/1‑140 (MQ=255)
                                                              cGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATAc                                                                       <  1:1327753/140‑1 (MQ=255)
                                                               gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATAcc                                                                      <  2:1211861/140‑1 (MQ=255)
                                                               gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAAATC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGGAAAAGAAAATCAATaac                                                                      >  2:1436688/1‑138 (MQ=255)
                                                               gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGCATAACAAAAAACAC‑CTTTTC‑CGGGGAA‑CCCCCACGGGGGAAAAGAAAATCaaaaac                                                                      >  2:339294/1‑136 (MQ=255)
                                                                tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGGATAAAAAAAAACGC‑CCTGTT‑CGGAGAACCCCCAACGGGGAAAA‑GAAATTCAATAccc                                                                     >  2:431045/1‑139 (MQ=255)
                                                                tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGAAAAAAAAAGAGGCATAACAAACAACAC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTTAATAccc                                                                     >  2:145126/1‑139 (MQ=255)
                                                                      gATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTa                                                               <  1:1536897/140‑1 (MQ=255)
                                                                      gATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTa                                                               <  2:1192096/140‑1 (MQ=255)
                                                                      gATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTa                                                               <  1:262082/140‑1 (MQ=255)
                                                                       aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                              <  1:1436688/140‑1 (MQ=255)
                                                                       aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                              <  1:216063/140‑1 (MQ=255)
                                                                          cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGa                                                           <  2:142238/140‑1 (MQ=255)
                                                                          cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGGAAAAGAAAATCAAAAACGTCGGTAATGa                                                           >  2:262082/1‑140 (MQ=255)
                                                                                 aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  1:431045/140‑1 (MQ=255)
                                                                                 aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  2:37341/140‑1 (MQ=255)
                                                                                 aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  2:343788/140‑1 (MQ=255)
                                                                                 aaGACATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGACGGGATAAAAAAAACGGACTTGCAAAAAATTCACTTTTC‑C‑GAGAA‑ACCCAAAGGGGCAAATTAAAATAAATACCCTGGGTCATAAAGaaatg                                                    >  2:406581/1‑138 (MQ=255)
                                                                                    tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                 <  1:714747/140‑1 (MQ=255)
                                                                                    tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                 <  2:693647/140‑1 (MQ=255)
                                                                                    gaaTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                 <  1:406581/138‑1 (MQ=255)
                                                                                         cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                            <  2:744529/140‑1 (MQ=255)
                                                                                          aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  1:222977/140‑1 (MQ=255)
                                                                                            aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                         <  2:1565715/140‑1 (MQ=255)
                                                                                            aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                         <  2:890653/140‑1 (MQ=255)
                                                                                            aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                         <  1:1461630/140‑1 (MQ=255)
                                                                                              tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAAAAAATC‑CTTTTC‑CCGGGAA‑ACCCAACGGGGGAAAAGAAAATTAAAACCCTCGGGAATGAAGAAAAGGAGGGGAGAAggg                                       >  2:55476/1‑140 (MQ=255)
                                                                                                 aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                    <  1:55476/140‑1 (MQ=255)
                                                                                                 aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTC‑CTTGTC‑CGGAGAA‑CCCCCACGGGGGAAACGAAAATCAATAACCTCGGGAATGACGAAAGGCAGGGGAGAAAGGGaa                                    >  2:1102688/1‑140 (MQ=255)
                                                                                                  cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCCACGGGGGAAAAGAAAATCAATAACGTCGGGAATGAAGAAAAGGAGGGGAGAAGGGGaaa                                   >  2:1522318/1‑139 (MQ=255)
                                                                                                    ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  2:1361827/140‑1 (MQ=255)
                                                                                                    ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:1074529/140‑1 (MQ=255)
                                                                                                     cATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACgag                                <  2:1021544/140‑1 (MQ=255)
                                                                                                      aTCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAAATCAATAACGTCGGGAATGACGAAAGGCAGGGGAGAAGGGCAACgaga                               >  2:5355/1‑140 (MQ=255)
                                                                                                            aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  2:1707307/140‑1 (MQ=255)
                                                                                                              aaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt                       <  2:947477/140‑1 (MQ=255)
                                                                                                               aaCAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTC‑CTTGTC‑CGGGGAA‑CCCCAACGGGGAAAAAGAAAATCAATACCGTCGGTAATGACGAAAAGCAGGGGAGAAGGGCAAAGAGACTGCAAATg                      >  2:744984/1‑140 (MQ=255)
                                                                                                                  aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  1:634152/140‑1 (MQ=255)
                                                                                                                      tGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGaa               <  1:1603065/140‑1 (MQ=255)
                                                                                                                             aTGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg        <  1:384484/140‑1 (MQ=255)
                                                                                                                             aTGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg        <  1:5355/140‑1 (MQ=255)
                                                                                                                               ggCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:1556053/140‑1 (MQ=255)
                                                                                                                               ggCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:739381/140‑1 (MQ=255)
                                                                                                                                   ggTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa  <  2:22843/140‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                            
GCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTC‑CTTGTC‑CGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568371‑4568641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑