BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,003,448	A→C	R53R (CGT→CGG)	fliC ←	flagellar filament structural protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,003,448	0	A	C	100.0%	416.1 / NA	105	R53R (CGT→CGG)	fliC	flagellar filament structural protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (46/59); total (46/59)

Only 100 of 108 total aligned reads displayed.

GCCTGTACCGTCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAAACGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGATCAGCGAGAGGCTGT  >  NC_000913/2003311‑2003584

gCCTGTACCGTCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCg                                                                                                                                        <  1:907264/140‑1 (MQ=255)

  cTGTACCGTCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGt                                                                                                                                      <  2:756414/140‑1 (MQ=255)

  cTGTACCGTCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGt                                                                                                                                      <  1:921824/140‑1 (MQ=255)

  cTGTACCGTCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGt                                                                                                                                      <  2:943847/140‑1 (MQ=255)

    gTACCGTCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTa                                                                                                                                    >  2:1152125/1‑140 (MQ=255)

    gTACCGTCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTa                                                                                                                                    >  2:1276149/1‑140 (MQ=255)

     tACCGTCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAg                                                                                                                                   >  1:724122/1‑140 (MQ=255)

     tACCGTCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAg                                                                                                                                   >  1:1088048/1‑140 (MQ=255)

     tACCGTCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAg                                                                                                                                   >  2:640077/1‑140 (MQ=255)

     tACCGTCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAg                                                                                                                                   >  1:229002/1‑140 (MQ=255)

     tACCGTCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAg                                                                                                                                   >  2:233534/1‑140 (MQ=255)

     tACCGTCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAg                                                                                                                                   >  1:749494/1‑140 (MQ=255)

          tCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCACCGGAGATCCCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGGGAACGGTTTAGCAATc                                                                                                                              <  2:224094/140‑1 (MQ=255)

          tCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATc                                                                                                                              >  2:137934/1‑140 (MQ=255)

          tCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATc                                                                                                                              >  2:745545/1‑140 (MQ=255)

          tCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATc                                                                                                                              >  2:1078090/1‑140 (MQ=255)

          tCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATc                                                                                                                              >  2:1429119/1‑140 (MQ=255)

          tCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATc                                                                                                                              >  1:717872/1‑140 (MQ=255)

            aGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGc                                                                                                                            <  2:395774/140‑1 (MQ=255)

               tCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTg                                                                                                                         >  1:1394925/1‑140 (MQ=255)

               tCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTg                                                                                                                         >  1:903407/1‑140 (MQ=255)

                    cacaCGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCg                                                                                                                    <  1:1152125/140‑1 (MQ=255)

                    cacaCGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCg                                                                                                                    <  1:282767/140‑1 (MQ=255)

                                   gttgttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTcg                                                                                                     >  2:1320451/1‑140 (MQ=255)

                                   gttgttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTcg                                                                                                     <  1:1429119/140‑1 (MQ=255)

                                   gttgttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTcg                                                                                                     <  1:473420/140‑1 (MQ=255)

                                   gttgttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTcg                                                                                                     <  1:278969/140‑1 (MQ=255)

                                    ttgttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTcgc                                                                                                    <  2:924448/140‑1 (MQ=255)

                                    ttgttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGCCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTcgc                                                                                                    >  2:734212/1‑140 (MQ=255)

                                     tgttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTcgcg                                                                                                   >  1:1641925/1‑140 (MQ=255)

                                     tgttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTcgcg                                                                                                   >  1:163827/1‑140 (MQ=255)

                                     tgttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTcgcg                                                                                                   >  1:1586649/1‑140 (MQ=255)

                                     tgttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTcgcg                                                                                                   <  2:724122/140‑1 (MQ=255)

                                     tgttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTcgcg                                                                                                   <  1:1356807/140‑1 (MQ=255)

                                      gttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGTAATCGCCTGACCCGCTGCGTCATCCTTCgcgc                                                                                                  <  2:1289661/140‑1 (MQ=255)

                                      gttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCgcgc                                                                                                  <  1:233534/140‑1 (MQ=255)

                                      gttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCgcgc                                                                                                  <  1:54459/140‑1 (MQ=255)

                                      gttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCgcgc                                                                                                  <  1:54705/140‑1 (MQ=255)

                                      gttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCgcgc                                                                                                  <  1:864511/140‑1 (MQ=255)

                                       ttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCt                                                                                                 >  2:1017948/1‑140 (MQ=255)

                                       ttgATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCt                                                                                                 <  1:1276149/140‑1 (MQ=255)

                                         gATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGt                                                                                               >  1:1195999/1‑140 (MQ=255)

                                                gACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACg                                                                                        <  2:515859/140‑1 (MQ=255)

                                                gACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACg                                                                                        <  2:435083/140‑1 (MQ=255)

                                                  cAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCa                                                                                      <  2:903407/140‑1 (MQ=255)

                                                     cgcgcCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGc                                                                                   >  1:674204/1‑140 (MQ=255)

                                                     cgcgcCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGc                                                                                   <  2:18287/140‑1 (MQ=255)

                                                     cgcgcCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGc                                                                                   <  2:1586649/140‑1 (MQ=255)

                                                     cgcgcCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGc                                                                                   <  2:1394925/140‑1 (MQ=255)

                                                     cgcgcCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGc                                                                                   >  2:1371538/1‑140 (MQ=255)

                                                     cgcgcCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGc                                                                                   >  2:261113/1‑140 (MQ=255)

                                                     cgcgcCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGc                                                                                   <  1:169006/140‑1 (MQ=255)

                                                      gcgcCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGcc                                                                                  <  1:615555/140‑1 (MQ=255)

                                                      gcgcCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGcc                                                                                  <  1:1078090/140‑1 (MQ=255)

                                                          cTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCagaa                                                                              >  1:1131718/1‑140 (MQ=255)

                                                               gtggtCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAagacag                                                                         >  2:856548/1‑140 (MQ=255)

                                                               gtggtCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAagacag                                                                         <  1:1371538/140‑1 (MQ=255)

                                                                  gtCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACg                                                                      <  1:968140/140‑1 (MQ=255)

                                                                    cTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCt                                                                    >  1:1220253/1‑140 (MQ=255)

                                                                    cTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCt                                                                    >  1:1003036/1‑140 (MQ=255)

                                                                       cgcAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGa                                                                 >  2:507270/1‑140 (MQ=255)

                                                                       cgcAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGa                                                                 >  2:1679853/1‑140 (MQ=255)

                                                                       cgcAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGa                                                                 <  2:58710/140‑1 (MQ=255)

                                                                       cgcAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGa                                                                 <  2:1641925/140‑1 (MQ=255)

                                                                         cAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATa                                                               <  1:1320451/140‑1 (MQ=255)

                                                                              gagaTACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACt                                                          >  2:960410/1‑140 (MQ=255)

                                                                                 aTACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGa                                                       >  2:1621260/1‑140 (MQ=255)

                                                                                   aCCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACa                                                     <  2:717872/140‑1 (MQ=255)

                                                                                   aCCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACa                                                     <  1:507270/140‑1 (MQ=255)

                                                                                      gtcgtTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAgcg                                                  <  1:261113/140‑1 (MQ=255)

                                                                                       tcgtTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAgcgc                                                 >  1:1450634/1‑140 (MQ=255)

                                                                                       tcgtTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAgcgc                                                 >  2:391561/1‑140 (MQ=255)

                                                                                        cgtTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCa                                                >  2:1640964/1‑140 (MQ=255)

                                                                                         gtTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAg                                               <  2:234212/140‑1 (MQ=255)

                                                                                          ttGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGa                                              <  1:137934/140‑1 (MQ=255)

                                                                                           tGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGAc                                             <  1:391561/140‑1 (MQ=255)

                                                                                            ggCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACt                                            <  2:1542748/140‑1 (MQ=255)

                                                                                                  aCGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCt                                      <  1:856548/140‑1 (MQ=255)

                                                                                                    gggCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCttg                                    <  2:1108465/140‑1 (MQ=255)

                                                                                                     ggCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCttgt                                   <  1:1640964/140‑1 (MQ=255)

                                                                                                     ggCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCttgt                                   <  1:637367/140‑1 (MQ=255)

                                                                                                         gccTGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGat                               <  1:1497182/140‑1 (MQ=255)

                                                                                                            tGAGTCAGGCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGAtatt                            <  1:1621260/140‑1 (MQ=255)

                                                                                                                    gCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAg                    <  2:1220253/140‑1 (MQ=255)

                                                                                                                    gCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAg                    <  1:1679853/140‑1 (MQ=255)

                                                                                                                    gCCTTTAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAg                    <  2:1003036/140‑1 (MQ=255)

                                                                                                                        ttAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGAt                <  1:960410/140‑1 (MQ=255)

                                                                                                                        ttAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGAt                >  1:581836/1‑140 (MQ=255)

                                                                                                                         tAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGAt                <  2:452895/139‑1 (MQ=255)

                                                                                                                         tAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGAt                >  1:452895/1‑139 (MQ=255)

                                                                                                                         tAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGATc               >  2:248732/1‑140 (MQ=255)

                                                                                                                         tAATGTTAGAGGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGATc               >  2:1500173/1‑140 (MQ=255)

                                                                                                                                 gagGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGATCAGCGagag       <  2:674204/140‑1 (MQ=255)

                                                                                                                                  agGTGAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGATCAGCGAGAgg      <  2:1088048/140‑1 (MQ=255)

                                                                                                                                      gAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGATCAGCgag         <  2:1551572/133‑1 (MQ=255)

                                                                                                                                      gAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGATCAGCgag         >  1:1551572/1‑133 (MQ=255)

                                                                                                                                      gAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGATCAGCGAGAGGCTGt  <  2:1195999/140‑1 (MQ=255)

                                                                                                                                      gAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGATCAGCGAGAGGCTGt  <  1:640077/140‑1 (MQ=255)

                                                                                                                                      gAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGATCAGCGAGAGGCTGt  <  1:522199/140‑1 (MQ=255)

                                                                                                                                      gAACCGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGATCAGCGAGAGGCTGt  <  1:1017948/140‑1 (MQ=255)

GCCTGTACCGTCAGTTCACGCACACGCTGTAAGTTGTTGTTGATTTCGGACAGCGCGCCTTCGGTGGTCTGCGCAACGGAGATACCGTCGTTGGCGTTACGGGCCGCCTGAGTCAGGCCTTTAATGTTAGAGGTGAAACGGTTAGCAATCGCCTGACCCGCTGCGTCATCCTTCGCGCTGTTAATACGCAAGCCAGAAGACAGACGCTCGATAGAACTCGACAGCGCAGACTGGTTCTTGTTGATATTATTTTGAGTGATCAGCGAGAGGCTGT  >  NC_000913/2003311‑2003584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`