| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,568,504 | 0 | T | G | 32.9% | 146.1 / 14.2 | 86 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| Reads supporting (aligned to +/- strand): ref base T (16/41); new base G (28/0); total (45/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.91e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAT > NC_000913/4568369‑4568639 | gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGaaaa > 1:1116586/1‑140 (MQ=255)gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGaaaa > 1:1292896/1‑140 (MQ=255) ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaaaaa < 2:183182/140‑1 (MQ=255) aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACg < 2:719600/140‑1 (MQ=255) gACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaaaacgtg < 2:396251/140‑5 (MQ=255) aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTg > 1:212977/1‑140 (MQ=255) gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCa < 2:74538/140‑1 (MQ=255) aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCAt > 1:371123/1‑140 (MQ=255) aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGG‑GGCATGGC‑GGGTAAAGAAACGTGGCATa < 2:747504/140‑1 (MQ=255) aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaacaaaca < 1:1007813/140‑1 (MQ=255) aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑t < 2:1313264/140‑1 (MQ=255) cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑Tc > 1:754600/1‑140 (MQ=255) cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGgag > 1:140847/1‑140 (MQ=255) aaTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTACTTG‑TCCGGAG‑AAcccc < 1:335055/140‑1 (MQ=255) tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGTGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCATAACAAAAAAATCCCTG‑TCCGGAG‑AAacccca > 2:988419/1‑138 (MQ=255) tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCaa < 1:1139393/140‑1 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCATAACAAACAAATCCTTT‑TCCGGAG‑AAACCCAACg > 1:217118/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTT‑TCCGGAG‑AACCCCAACg > 1:26515/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGAAAAAAAAAGAGGCATAACAAAAAACACCTCT‑TCCGGAG‑AACCCCAACg > 2:855529/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCATAAAAAAAAACTCCTTT‑TCCGGAG‑AACCCCAACggg > 1:1203030/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCATTAAAAAAAACACCTTT‑TTCGGAG‑AAACCCAAAggg > 1:1140774/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCATAACAAACAACCCCTTG‑TCCCGAG‑AACCCCAACggg > 1:931914/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGTAAAAAAAGTGGGCGAAAAAAAAAATTCCCGT‑TCCGGGG‑AGCCCCAACggg > 2:690579/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAAAAAACAACTCCCTG‑TCCGGAG‑AACCCCAACgggg > 1:204845/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACATGGCACAACAAACAAAACCCTT‑TCCGGAG‑AAACCCCACaggg > 2:526629/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTG‑TCCGGAG‑AACCCCCACgggg > 2:604381/1‑140 (MQ=255) aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGaa > 1:1325027/1‑140 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACg < 2:1055498/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACg < 2:1057164/140‑1 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAATGGCATAACAAAAAACACCCTT‑TCCGGAG‑AAACCCCACGGGGGAAACGaa > 2:784665/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGCGGCATAAAAAAAAACACCTTG‑TCCGGAG‑AAACCCAAAGGGGGAAAAGaa > 1:611658/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACATGGCATAAAAAAAAACTCCCTG‑TCCGGAG‑AAACCCAACGGGGGAAAAGaaa > 1:188849/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAAAAAAAAAACCCTTT‑TCCCGGG‑AACCCCCACCGGGGAAAAGaaa > 2:355761/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGCAAAAAAAAGGGGC‑TAAAAAAAAAATACTTT‑GCCGGGG‑AACACCAACGGGGAAAACAAAAATCaa > 2:396945/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACg < 1:625412/132‑1 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACg > 2:625412/1‑132 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGAGGCATAAAAAAAAACTCCTTT‑TCCGGAG‑AAACCCCACGGGGGAAAAGaaaattaa > 2:1087022/1‑135 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGAGGCATAAAAAAAAACTCCCTT‑TCCGGAG‑AAACCCAACGGGGGAAAAGAAAATCaa > 1:640572/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCATAACAAAAAACTCCCTG‑TCCGGAG‑AACCCCAACGGGGGAAAAGAAATTCaa > 1:770343/1‑140 (MQ=255) tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTCG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAAt < 2:1329768/140‑1 (MQ=255) ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATa < 2:140847/140‑1 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACATGGGATAAAAAAAAACTCCTTT‑TCCGGAG‑AACCCCCACGGGGGAAACGAAAATCAAAAcc > 2:1297979/1‑140 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTT‑TCCGGAG‑AACCCCAACGGGGGAAAAGAAAATCAATAccc > 2:623479/1‑139 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCATAAAAAACAACTCCTTG‑TCCGGGG‑AACCCCCACGGGGGAAAAGAAAATCAATAccc > 2:146429/1‑139 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGCGGCATAACAAAAAACTCCTTG‑TCCGGAG‑AACCCCAAAGGGGAAAACGAAAATCAAAAccc > 2:641917/1‑139 (MQ=255) cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGt < 1:1182905/140‑1 (MQ=255) cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAACAACTCCCTG‑TCCGGGG‑AACCCCCACGGGGGAAAAGAAAATTAATaaccc > 2:438562/1‑136 (MQ=255) aCAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGGAAAAGAAAATCAATACCGTCg > 2:1223628/1‑140 (MQ=255) aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCATAACAAACAAATCCTTG‑TCCGGAG‑AACCCCAACGGGGGAAAAGAAAATCAAAACCGTCggg > 2:597992/1‑139 (MQ=255) aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTaa < 1:853701/140‑1 (MQ=255) aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAAAAACCCCTTG‑TCCGGAG‑AAACCCAACGGGGAAAAAGAAAATCAAAACCGTCGGGaa > 2:342040/1‑140 (MQ=255) cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg < 2:212977/140‑1 (MQ=255) cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg < 1:597992/140‑1 (MQ=255) agcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGa < 1:1297979/140‑1 (MQ=255) gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa < 1:342040/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa < 2:754600/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCAAAAAAAAAAACTCCCTG‑TCCGGAG‑AACCCCAACCGGGAAAACGAAAATCAATACCGTCGGGAATGACGaaa > 2:694204/1‑140 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg < 2:371123/140‑1 (MQ=255) tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg < 1:526629/140‑1 (MQ=255) tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg < 1:129630/140‑1 (MQ=255) cATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAgg < 1:292626/140‑1 (MQ=255) tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAAGGGGATAACAAAAAAAACCCTGTTCGGGGG‑AACCCCACCGGGGAAAA‑AAAAATCAATAACCTCGGTAATGACGAAAAGCAgggg > 2:1365319/1‑138 (MQ=255) aCAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga < 1:199296/140‑1 (MQ=255) cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGGAAAAGAAAATCAATAACGTCGGGAATGACGAAAgggaggggag > 2:815462/1‑140 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga < 2:1116586/140‑1 (MQ=255) aaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAAAGGCATAAAAAAAAAATCCTTG‑TCCGGAG‑AACCCCAACGGGGGAAAAGAAAATCAATACCCTCGGTAATGACGAAAGGCAGGGGAGaa > 2:552167/1‑140 (MQ=255) aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg < 1:380462/140‑1 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGGGGCATAACAAACAAATCCCTG‑TCCGGAG‑AACCCCAACGGGGGAAAAGAAAATCAATACCGTCGGGAATGACGAAAAGCAGGGgaggaagg > 2:560085/1‑135 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAAAAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAAAGAAAATCAATACCGTCGGTAATGACGAAAAGCAGGGGGGAAGGGCaaa > 2:199296/1‑139 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGGAAACGAAAATCAATAACGTCGGGAATGACGAAAAGCAGGGGAGAAGGGGaaa > 2:1345948/1‑139 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAACAGGCCTAAAAAAAAACCCCTTT‑TCCGGAG‑AACCCCAACGGGGGAAACGAAAATTAATACCCCCGGGAATGACGAAAAGGAGGGGGGGAAGGCaaa > 2:25188/1‑139 (MQ=255) aTCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACgaga > 1:1151791/1‑140 (MQ=255) aTCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAAAAACCCCTTT‑TCCGGAG‑AACCCCCACGGGGGAAAAGAAAATCAAAAACCTCGGGAATGACGAAAAGCAGGGGAGAAGGGGAACgaaa > 2:769968/1‑138 (MQ=255) tCGGGAAAAACAGTGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc < 1:988419/140‑1 (MQ=255) tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc < 1:1345948/140‑1 (MQ=255) tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc < 2:640572/140‑1 (MQ=255) tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc < 2:384457/140‑1 (MQ=255) gggAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTg < 1:623479/140‑1 (MQ=255) aaaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa < 2:690505/140‑1 (MQ=255) gCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt < 1:1221797/140‑1 (MQ=255) gCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt < 2:188849/140‑1 (MQ=255) gCGTGGCGACATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATGCCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt < 1:1126366/140‑1 (MQ=255) cGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGGAATGACGAAAAGCAGGGGAGAAGGGCAACGAGACTGCAAATGTACTg > 1:369436/1‑140 (MQ=255) ggcggcATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAt < 1:552167/140‑1 (MQ=255) gcATGGC‑GGGGAAAAAAAAGGGGCATAACAAACAACTCCTTT‑TCCGGAGAAACCCCACCGGGGAAAA‑GAAAATTAAAACCGTCGGTAATGACGAAAGGGAGGGGAGAAGGGCAACGAGAATGCAAATGTACTGAAtttta > 2:608619/1‑138 (MQ=255) cATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCAt < 1:694204/140‑1 (MQ=255) ggC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:53396/140‑1 (MQ=255) ggC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 2:101526/140‑1 (MQ=255) c‑GGGGAAAAAAAAGTGGGGTAACAAAAAAATCCTTG‑TCCCGGG‑AAACCCAACGGGGAAAAAGAAAATTAAAAACCCCGGGAATGACGAAAGGCAGGTGAGAAGGGGCACGAGAATGCAAAAGTACTGAATTTCATGTAAt > 2:382941/1‑140 (MQ=255) | GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTG‑TCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAT > NC_000913/4568369‑4568639 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |