Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,544,359 T→G intergenic (‑299/+25) narU ← / ← yddJ nitrate/nitrite transporter NarU/uncharacterized protein YddJ

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,544,3590TG99.0% 392.1 / ‑4.6 100intergenic (‑299/+25)narU/yddJnitrate/nitrite transporter NarU/uncharacterized protein YddJ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base G (60/39);  minor base A (1/0);  total (61/39)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.82e-01

Only 100 of 102 total aligned reads displayed.

ATATGTGTTACTAAATGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATC  >  NC_000913/1544223‑1544494
                                                                                                                                        |                                                                                                                                       
atatGTGTTACTAAATGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTgata                                                                                                                                      >  1:1135499/1‑140 (MQ=255)
         aCTAAATGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGtg                                                                                                                             >  2:455599/1‑140 (MQ=255)
          cTAAATGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGtga                                                                                                                            >  1:321037/1‑140 (MQ=255)
          cTAAATGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGtga                                                                                                                            >  2:1037822/1‑140 (MQ=255)
           tAAATGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGtgat                                                                                                                           >  2:1368414/1‑140 (MQ=255)
             aaTGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGtgatga                                                                                                                         >  2:21806/1‑140 (MQ=255)
             aaTGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGtgatga                                                                                                                         >  2:419281/1‑140 (MQ=255)
               tGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGAtt                                                                                                                       >  1:97499/1‑140 (MQ=255)
                 taactaacAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTa                                                                                                                     <  1:419281/140‑1 (MQ=255)
                 taactaacAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTa                                                                                                                     >  1:281792/1‑140 (MQ=255)
                 taactaacAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTa                                                                                                                     >  2:1004130/1‑140 (MQ=255)
                 taactaacAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTa                                                                                                                     >  1:1159075/1‑140 (MQ=255)
                    ctaacAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTc                                                                                                                  <  2:1273933/140‑1 (MQ=255)
                    ctaacAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATAAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTc                                                                                                                  >  2:136842/1‑140 (MQ=255)
                          aGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTaaa                                                                                                            <  2:1153648/140‑1 (MQ=255)
                               aCCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTaaaa                                                                                                           <  1:1209493/136‑1 (MQ=255)
                               aCCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAAGTAGTGATGATTTATTCACTaaaa                                                                                                           >  2:1209493/1‑136 (MQ=255)
                                 cTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCa                                                                                                     >  2:1287090/1‑140 (MQ=255)
                                   tCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATg                                                                                                   >  2:385391/1‑140 (MQ=255)
                                    cAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGa                                                                                                  >  1:736053/1‑140 (MQ=255)
                                     aaaCGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGaa                                                                                                 >  1:1334246/1‑140 (MQ=255)
                                     aaaCGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGaa                                                                                                 >  1:585631/1‑140 (MQ=255)
                                          gggTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTgga                                                                                            <  1:854258/140‑1 (MQ=255)
                                           ggTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTggag                                                                                           >  2:885103/1‑140 (MQ=255)
                                                    ttGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                  <  2:736053/140‑1 (MQ=255)
                                                    ttGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATAAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                  <  1:136842/140‑1 (MQ=255)
                                                     tGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATc                                                                                 >  2:1094251/1‑140 (MQ=255)
                                                     tGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATc                                                                                 >  2:1114304/1‑140 (MQ=255)
                                                     tGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATc                                                                                 <  1:666868/140‑1 (MQ=255)
                                                     tGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATc                                                                                 <  1:1004130/140‑1 (MQ=255)
                                                     tGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATc                                                                                 >  1:132243/1‑140 (MQ=255)
                                                            aTGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAg                                                                          >  1:1042270/1‑140 (MQ=255)
                                                            aTGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAg                                                                          >  2:768740/1‑140 (MQ=255)
                                                             tGTCATTTTTCAACCCTTCAGATCGTGAATATAAGGGGTTACATATTAACTATATGATCAACAAGACCAGAAACTGATAGAATTAAAGATGATTGATGCACTAAAGAGGCCATGAACTGGAACAAAACCATGAGTCgaga                                                                         >  2:1361069/1‑140 (MQ=255)
                                                             tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                         <  1:1148544/140‑1 (MQ=255)
                                                             tGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGa                                                                         >  1:144497/1‑140 (MQ=255)
                                                                 aTGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGt                                                                     <  1:1037822/140‑1 (MQ=255)
                                                                 aTGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGt                                                                     <  2:456290/140‑1 (MQ=255)
                                                                  tGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTc                                                                    >  1:537594/1‑140 (MQ=255)
                                                                   gTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCt                                                                   >  1:233807/1‑140 (MQ=255)
                                                                   gTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCt                                                                   >  2:1121090/1‑140 (MQ=255)
                                                                    tttCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                  >  2:298864/1‑124 (MQ=255)
                                                                    tttCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGAt                                                                                  <  1:298864/124‑1 (MQ=255)
                                                                     ttCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTAt                                                                 <  1:1126391/140‑1 (MQ=255)
                                                                      tCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATc                                                                >  1:160804/1‑140 (MQ=255)
                                                                         aCCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGt                                                             >  2:87907/1‑140 (MQ=255)
                                                                            cTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTcc                                                          >  2:178677/1‑140 (MQ=255)
                                                                             ttCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCct                                                         <  2:746271/140‑1 (MQ=255)
                                                                             ttCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCct                                                         <  1:1365394/140‑1 (MQ=255)
                                                                             ttCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCct                                                         <  1:385391/140‑1 (MQ=255)
                                                                              tCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTAATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCctc                                                        >  2:144204/1‑140 (MQ=255)
                                                                               cAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCctct                                                       >  2:325826/1‑140 (MQ=255)
                                                                                       gAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGNAGGTCTATCGGTTCCTCTCTTannnn                                               >  2:1286351/1‑136 (MQ=255)
                                                                                         aTCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCt                                             <  2:801831/140‑1 (MQ=255)
                                                                                           cTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGa                                           >  1:580083/1‑140 (MQ=255)
                                                                                            tAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCt                                             <  1:578805/137‑1 (MQ=255)
                                                                                            tAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCt                                             >  2:578805/1‑137 (MQ=255)
                                                                                            tAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGAt                                          >  2:1014403/1‑140 (MQ=255)
                                                                                                   ttACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaata                                   <  2:84894/140‑1 (MQ=255)
                                                                                                   ttACATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGtaata                                   <  1:301757/140‑1 (MQ=255)
                                                                                                     aCATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                 <  2:160804/140‑1 (MQ=255)
                                                                                                     aCATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                 >  1:826031/1‑140 (MQ=255)
                                                                                                     aCATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTaataat                                 >  2:467910/1‑140 (MQ=255)
                                                                                                      cATATTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATc                                >  1:369404/1‑140 (MQ=255)
                                                                                                        tatTAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGt                              <  2:132243/140‑1 (MQ=255)
                                                                                                           tAACTATATTATCAACAAGACCAGATACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttat                           >  2:641122/1‑140 (MQ=255)
                                                                                                           tAACTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttat                           >  2:79845/1‑140 (MQ=255)
                                                                                                            aaCTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttatt                          >  2:241131/1‑140 (MQ=255)
                                                                                                            aaCTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGttatt                          <  1:241131/140‑1 (MQ=255)
                                                                                                              cTATATTATCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTAc                        <  2:605699/140‑1 (MQ=255)
                                                                                                                 tattatCAACAAGACCAGATACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                     <  1:641122/140‑1 (MQ=255)
                                                                                                                 tattatCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                     <  2:582197/140‑1 (MQ=255)
                                                                                                                 tattatCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                     <  2:585631/140‑1 (MQ=255)
                                                                                                                 tattatCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                     <  1:1014403/140‑1 (MQ=255)
                                                                                                                 tattatCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                     <  2:1042270/140‑1 (MQ=255)
                                                                                                                 tattatCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                     >  1:751130/1‑140 (MQ=255)
                                                                                                                 tattatCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                     >  1:529486/1‑140 (MQ=255)
                                                                                                                 tattatCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                     >  1:570704/1‑140 (MQ=255)
                                                                                                                 tattatCAACAAGACCAGACACTGATAGAATTAGAGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagt                     >  1:591376/1‑140 (MQ=255)
                                                                                                                    tatCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagtaag                  >  1:730434/1‑140 (MQ=255)
                                                                                                                    tatCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagtaag                  >  1:33392/1‑140 (MQ=255)
                                                                                                                     atCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagtaagt                 <  1:1361069/140‑1 (MQ=255)
                                                                                                                      tCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagtaagta                <  2:1159075/140‑1 (MQ=255)
                                                                                                                      tCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagtaagta                <  1:1121090/140‑1 (MQ=255)
                                                                                                                      tCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagtaagta                <  2:529486/140‑1 (MQ=255)
                                                                                                                      tCAACAAGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACagtaagta                <  2:233807/140‑1 (MQ=255)
                                                                                                                        aacaaGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTAtt              >  1:978580/1‑140 (MQ=255)
                                                                                                                         acaaGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTg             >  1:74153/1‑140 (MQ=255)
                                                                                                                         acaaGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTg             >  1:693111/1‑140 (MQ=255)
                                                                                                                           aaGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACa                       <  2:635751/128‑1 (MQ=255)
                                                                                                                           aaGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACa                       >  1:635751/1‑128 (MQ=255)
                                                                                                                           aaGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGtt           >  1:1118085/1‑140 (MQ=255)
                                                                                                                           aaGACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTCCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGtt           >  2:912910/1‑140 (MQ=255)
                                                                                                                             gACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTa         >  1:341369/1‑140 (MQ=255)
                                                                                                                             gACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTa         >  1:641091/1‑140 (MQ=255)
                                                                                                                             gACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTa         >  1:274297/1‑140 (MQ=255)
                                                                                                                             gACCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTa         >  2:866913/1‑140 (MQ=255)
                                                                                                                              aCCAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTAt        >  1:847900/1‑140 (MQ=255)
                                                                                                                               ccAGACACTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTAtt       <  2:74153/140‑1 (MQ=255)
                                                                                                                                    cacTGATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATc  <  1:87907/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                       
ATATGTGTTACTAAATGTAACTAACAAGCTAACCTTCAAACGGGGTTAATCTTTGAACGTATGTCATGTTTCAACCCTTCAGATCGTGAATCTAAAGGGTTACATATTAACTATATTATCAACAAGACCAGACACTTATAGAATTAGTGATGATTTATTCACTAAAAAGGCCATGAACTGGAGGAAAACGATCTGTCCAGAAGGTCTATCGGTTCCTCTCTTATTGCCTGATTGTAATAATCGTTATTACAGTAAGTATTGTTTATTTCATC  >  NC_000913/1544223‑1544494

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: