New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4037217	11 (0.110)	20 (0.250) +TTATCAACACATGAGTGTTGATCCCA	7/224	4.8	69.1%	noncoding (77/77 nt)	ileT	tRNA‑Ile
	?	NC_000913	4037256 =	NA (NA)					intergenic (+39/‑4)	ileT/alaT	tRNA‑Ile/tRNA‑Ala
Rejected: Coverage evenness skew score above cutoff.

TGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4037146‑4037217 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCT  >  NC_000913/4037256‑4037338                                                                         ||||||||||||||||||||||||||                                                                                    ttTAGCTCAGCTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAa                                           >  1:249999/3‑139   TAGCTCAGCTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAagc                                         <  2:117134/140‑4         agcTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGG                                   >  1:12275/4‑140         agcTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGG                                   >  2:807002/4‑140                  GAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTT                          <  1:268560/140‑1                   AGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTC                         >  2:61941/1‑140                     CGCACCCCTGATAAGGGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGA                       >  2:964075/1‑140                     CGCACCCCTGATAAGGGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGA                       >  2:967768/1‑140                        ACCCCTGATAAGGGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGATCC                    >  1:560708/1‑140                        ACCCCTGATAAGGGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGATCC                    >  2:566105/1‑140                             TGATAAGGGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGATCCCGCtt               <  1:964075/140‑3                             TGATAAGGGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGATCCCGCtt               <  1:967768/140‑3                                    GGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGATCCCGCTTGGCTCCA        >  1:477525/1‑140                                    GGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGATCCCGCTTGGCTCCA        >  2:926107/1‑140                                    GGTGAGGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGATCCCGCTTGGCTCCA        >  2:967054/1‑140                                         GGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGATCCCGCTTGGCTCCAtttgt   >  2:138247/1‑135                                         GGTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGATCCCGCTTGGCTCCAtttgt   >  1:11577/1‑135                                          GTCGGTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGATCCCGCTTGGCTCCAtttgtt  <  1:61941/140‑7                                              GTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGATCCCGCTTGGCTCCAtttgt   <  1:372419/135‑6                                              GTGGTTCGAGTCCACTAAGGCCCACCATTATCAACACATGAGTGTTGATCCCATTAAGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCAAGCAGGAGGTCAGCGGTTCGATCCCGCTTGGCTCCAtttgt   >  2:372419/1‑130                                                                         ||||||||||||||||||||||||||                                                                                    TGTAGCTCAGGTGGTTAGAGCGCACCCCTGATAAGGGTGAGGTCGGTGGTTCAAGTCCACTCAGGCCTACCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4037146‑4037217 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTATGGGGCTATAGCTCAGCTGGGAGAGCGCCTGCTTTGCACGCAGGAGGTCTGCGGTTCGATCCCGCATAGCTCCACCATCT  >  NC_000913/4037256‑4037338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.