| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1354143 | 59 (0.660) | 3 (0.040) | 3/256 | 7.8 | 4.4% | coding (376/891 nt) | sapC | putrescine ABC exporter membrane protein SapC |
| ? | NC_000913 | = 1354235 | 75 (0.910) | coding (284/891 nt) | sapC | putrescine ABC exporter membrane protein SapC | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TACCATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCG‑‑GAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1353997‑1354143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgagcg‑‑gagCTGCGCCAACCGTGGGTGGCGCATTTGTGGTGACGCTTGCCGCGACGATCTGTGGCCTGGTACTGGGCACCTTCGCCGGGGCGACACACGGCCTCCGCTCAGCGGTGCTTAACCATATTCTGGATACCTTACTGGCGAT < NC_000913/1354235‑1354097 TACCATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTG < 2:986813/140‑1 ACCATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGA > 1:224750/1‑140 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAGCGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGTTATCCAGAATATGGTTAAGCACCGCTGAGC < 1:1197091/140‑1 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCGCCGCTGAGC < 1:165439/140‑1 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGC < 2:644897/140‑1 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGC < 1:1314281/140‑1 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGC < 1:232048/140‑1 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGC < 1:234480/140‑1 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGC < 1:472001/140‑1 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGC < 1:533469/140‑1 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGC < 2:409891/140‑1 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGC < 1:1410920/140‑1 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGC < 2:1499776/140‑1 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGC < 2:1482383/140‑1 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGC < 2:1191655/140‑1 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGC < 2:1314790/140‑1 CATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATACAGAATATGGTTAAGCACCGCTGAGC < 2:216406/140‑1 TACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCG‑‑G < 1:939849/140‑1 TACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCG‑‑G < 2:57726/140‑1 TACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCG‑‑G < 1:1430673/140‑1 GCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCG‑‑G < 2:1444654/134‑1 GCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCG‑‑G > 1:1444654/1‑134 CCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCG > 2:798996/1‑124 CCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCG < 1:798996/124‑1 ACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCGGAGAGCTGCGCCAACCGTGGGTGG < 2:790271/140‑1 CAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCG‑‑GAGCTGCGCCAACCGTGGGTGGCGCATTTGTGGTGACGCTTGCCGCGACGATCTGTGGCCTGGTACTGGGCACCTTCGCCGGGGCGA > 1:1068888/1‑126 CAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCG‑‑GAGCTGCGCCAACCGTGGGTGGCGCATTTGTGGTGACGCTTGCCGCGACGATCTGTGGCCTGGTACTGGGCACCTTCGCCGGGGCGA < 2:1068888/126‑1 GAGCG‑‑GAGCTGCGCCAACCGTGGGTGGCGCATTTGTGGTGACGCTTGCCGCGACGATCTGTGGCCTGGTACTGGGCACCTTCGCCGGGGCGACACACGGCCTCCGCTCAGCGGTGCTTAACCATATTCTGGATACCTTAC > 2:1047825/1‑140 CG‑‑GAGCTGCGCCAACCGTGGGTGGCGCATTTGTGGTGACGCTTGCCGCGACGATCTGTGGCCTGGTACTGGGCACCTTCGCCGGGGCGACACACGGCCTCCGCTCAGCGGTGCTTAACCATATTCTGGATACCTTACTGG > 2:697741/1‑140 GCTGCGCCAACCGTGGGTGGCGCATTTGTGGTGACGCTTGCCGCGACGATCTGTGGCCTGGTACTGGGCACCTTCGCCGGGGCGACACACGGCCTCCGCTCAGCGGTGCTTAACCATATTCTGGATACCTTACTGGCGAT < 1:849977/140‑1 TACCATACGCGGCAGCAATGCCAGCCAGACAGCAAACATAGCGTGGGACAAACTCGGTCCGGCAAACGCTACAACGATAATTGCCAACAGCAGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCG‑‑GAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1353997‑1354143‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgagcg‑‑gagCTGCGCCAACCGTGGGTGGCGCATTTGTGGTGACGCTTGCCGCGACGATCTGTGGCCTGGTACTGGGCACCTTCGCCGGGGCGACACACGGCCTCCGCTCAGCGGTGCTTAACCATATTCTGGATACCTTACTGGCGAT < NC_000913/1354235‑1354097 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |