Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,525,760 | 0 | G | A | 20.3% | 146.4 / 10.3 | 59 | S74L (TCG→TTG) | ansP | L‑asparagine transporter |
Reads supporting (aligned to +/- strand): ref base G (33/14); new base A (0/12); total (33/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 8.63e-06 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GTTGATGAAGTACATCCAGCCAGCAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTGCACCTGGCGATTGCCCATCGCTTT > NC_000913/1525630‑1525899 | gTTGATGAAGTACATCCAGCCAGCAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACa > 2:49346/1‑137 (MQ=255) gTTGATGAAGTACATCCAGCCAGCAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACa < 1:49346/137‑1 (MQ=255) gaAGTACATCCAGCCAGCAACATAAGCGGCTTTCTCCCCCAAAAC‑CTCACGGGCATAAGAAAAAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACaaa < 2:1188124/140‑1 (MQ=255) gaAGTACACCCAGCCAGCAACATAAGCGGCTTTCTCCCCAAAAAA‑CTCACGGGAAAAAGAAAAAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACaaa < 2:65895/140‑1 (MQ=255) aaGTACATCCAGCCAGCAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAAt > 1:805953/1‑140 (MQ=255) ccATCCAGCCAGCAACATAAGCGGCTTTCTCCCCAAAAAC‑CTCACGGGCATAAGAAAAAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATtaaa < 2:451554/139‑1 (MQ=255) aCATCCAGCCAGCAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATtaaa > 2:1001917/1‑140 (MQ=255) aCATCCAGCCAGCAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATtaaa > 1:863192/1‑140 (MQ=255) aCATCCAGCCAGCAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATtaaa > 2:439336/1‑140 (MQ=255) cATCCAGCCAGCAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATtaaat > 1:1128785/1‑140 (MQ=255) tCCAGCCAGCAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATtaaataa > 1:65895/1‑140 (MQ=255) tCCAGCCAGCAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATtaaataa > 2:37957/1‑140 (MQ=255) ccagccagCAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATtaaataaa > 1:72297/1‑140 (MQ=255) agccagcAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAAcc < 1:773537/140‑1 (MQ=255) ccagcAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAAccag > 1:804290/1‑140 (MQ=255) ccagcAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAAccag > 1:700449/1‑140 (MQ=255) gcAACATAAGCGGCTTTCTCCCCAAAAAA‑CCCACGGGCAAAAAAAAAAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAAccagtgc < 2:805953/140‑1 (MQ=255) gcAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAAccagtgc < 1:1046814/140‑1 (MQ=255) gcAACATAAGCGCCTTTCTCCCCAAAAAA‑CTCCCGGGCATAAAAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAAccagtgc < 2:804290/140‑1 (MQ=255) gcAAAATAAGCGGTTTTCTCACCCAAAAA‑CTCAGGGCCATAAAAAACAAAA‑CTGCCACGGGAAGGGCGGTGTAGCCCCAGCTCACCCAATGCACGCAGAATAAAAACCGAAAACAAGCCACAAATTAAATAAAccagtgc < 2:116962/140‑1 (MQ=255) gCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCggg > 1:428223/1‑140 (MQ=255) ggCTTTCCCCCCAAAAAC‑CCCACGGGAAAAAAAAAAAAAC‑CTGCCACGGGAAGGGGGGTGTACCACCAGCCCACCCAAGGCACGCAAAAAAAAAAACAAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGcc < 2:1019025/140‑1 (MQ=255) ttCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGc > 1:758623/1‑140 (MQ=255) ccccAAAAACCTCAGGGGAAAAAGAAAAAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCAAATGCCCGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCAtt < 1:705893/139‑1 (MQ=255) aaaaa‑CCCAGGGCAAAAAAAAAAAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCCCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAg < 2:1111932/140‑1 (MQ=255) aa‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCg > 2:313752/1‑140 (MQ=255) acctccggggAATAAAAAAAAAAC‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCCCCAAATGCACGCAGAAAAAAAAACAAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCg < 2:1148722/133‑1 (MQ=255) acccccGGGCAAAAAAAAAAAAACCTGCCACGGGAGGGGGGGTGAAGCACCAGCCCCCCCAATGCACGCAAAATAAAAAACAAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCg < 2:431300/135‑1 (MQ=255) aCGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTc > 2:1227513/1‑140 (MQ=255) gggCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCt > 2:1166014/1‑140 (MQ=255) gcaaTAAAAAAAAAAA‑CGGCCACTGAAAGGGCGGTGTAGCACCAGCTCACCCAAGACGCGCAGAATAAAAAACAAAAACAAGCCACAAATTAAATAACCCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTg < 2:795383/137‑1 (MQ=255) cAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAAc > 1:1075849/1‑140 (MQ=255) aaaa‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACa > 2:842662/1‑140 (MQ=255) aa‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCAAATGCACGCAGAAAAAAAAACAAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAg < 1:439336/140‑1 (MQ=255) accgCCACTGGAAGGGGGGTGTAGCCCCAGCCCCCCAAATGCACGAAAAAAAAAAAACAAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGc < 2:372698/137‑1 (MQ=255) gCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCgg > 1:1151115/1‑140 (MQ=255) ggggggTGAACCACCACCCCCCCAAATCCACGAAAAAAAAAAACCAAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATcgc < 2:3360/140‑1 (MQ=255) ggCGGTGAACCACCACCCCCCCCAATCCACCAAAAAAAAAAAACAAAAACAAGCCACAAATTAAAAAACCCAGTCCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATcgcg < 2:428223/140‑1 (MQ=255) gtgtAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGcgccgc > 1:1235163/1‑140 (MQ=255) gtAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCa > 2:372560/1‑140 (MQ=255) tAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCaa > 2:827527/1‑140 (MQ=255) ccAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCg > 1:602664/1‑140 (MQ=255) gCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGatc > 2:647090/1‑140 (MQ=255) gCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGatc > 2:68319/1‑140 (MQ=255) gCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGatc > 2:846189/1‑140 (MQ=255) gCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGatc > 1:10295/1‑140 (MQ=255) cccccaaaTGCAGGCAAAAAAAAAAACAAAAAAAAGCCACAAATAAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGatcat < 2:602664/134‑1 (MQ=255) cccaacggCACGGAAAAAAAAAAACGAAAACAAGCCACAAATTAAATAAACCGGGGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCt < 1:397225/133‑1 (MQ=255) cccAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTg > 2:1249027/1‑140 (MQ=255) cccAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTg > 2:704566/1‑140 (MQ=255) ccaaaTGCCCGCAAAAAAAAAAACAAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTg < 1:177449/137‑1 (MQ=255) aTGCACGCAAAAAAAAAAACAAAAACAAGCCACAAATAAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTGCAcc < 2:1151115/140‑1 (MQ=255) tGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTGCACCt > 1:766282/1‑140 (MQ=255) gCAGAAAAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTGCACCTGGCGa < 1:1239209/140‑1 (MQ=255) cAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTGCACCTGGCGAt > 2:387078/1‑140 (MQ=255) cAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTGCACCTGGCGAt > 1:619416/1‑140 (MQ=255) tAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTGCACCTGGCGATTGccc > 2:388574/1‑140 (MQ=255) aaaaaaCAAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTGCACCTGGCGATTGCCCa < 2:1075849/140‑1 (MQ=255) aaaaaaCAAAAAAAAGCCACAAATTAAATAACCCAGTGCCAGGGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTGCACCTGGCGATTGCCCa < 2:217532/140‑1 (MQ=255) aaaaacaaaaacAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTGCACCTGGCGATTGCCCAt < 1:1001917/140‑1 (MQ=255) aaaCGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTGCACCTGGCGATTGCCCATCg < 1:68319/140‑1 (MQ=255) gAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTGCACCTGGCGATTGCCCATCGCttt > 1:332268/1‑140 (MQ=255) gAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTGCACCTGGCGATTGCCCATCGCttt > 2:230593/1‑140 (MQ=255) | GTTGATGAAGTACATCCAGCCAGCAACATAAGCGGCTTTCTCACCCAAAAA‑CTCACGGGCATAAGAAACAAAA‑CTGCCACTGGAAGGGCGGTGTAGCACCAGCTCACCCAATGCACGCAGAATAAAAAACGAAAACAAGCCACAAATTAAATAAACCAGTGCCAGTGCGGGCCCCGCCATTTGCAGTCGGGCTCCTGCACCTAAAAACAAGCCGGTGCCAATCGCGCCGCCAATGGCGATCATCTGCACCTGGCGATTGCCCATCGCTTT > NC_000913/1525630‑1525899 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |