Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG30.2% 268.1 / 21.1 141T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (24/73);  new base G (42/0);  total (68/73)
Fisher's exact test for biased strand distribution p-value = 8.78e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 148 total aligned reads displayed.

GCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568365‑4568641
                                                                                                                                           |                                                                                                                                           
gcagGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGt                                                                                                                                             >  2:709858/1‑140 (MQ=255)
    gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaa                                                                                                                                         >  1:1345022/1‑140 (MQ=255)
      gCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaa                                                                                                                                       >  1:761520/1‑140 (MQ=255)
           aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaaaagag                                                                                                                                  >  2:100564/1‑136 (MQ=255)
            cTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTgg                                                                                                                                 <  2:1109694/140‑1 (MQ=255)
              gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑a                                                                                                                              <  1:559078/140‑1 (MQ=255)
               aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACATgggaa                                                                                                                              >  2:596259/1‑137 (MQ=255)
                  tCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑aac                                                                                                                         <  1:495027/140‑1 (MQ=255)
                    ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTg                                                                                                                                  >  1:1000447/1‑131 (MQ=255)
                    ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑aacaa                                                                                                                       <  1:1047636/140‑1 (MQ=255)
                    ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGC‑AT‑aaaaa                                                                                                                       >  2:811211/1‑140 (MQ=255)
                     gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGG‑AT‑aacaaa                                                                                                                      >  2:1405988/1‑140 (MQ=255)
                      cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑aacaaac                                                                                                                     <  2:820155/140‑1 (MQ=255)
                           aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTc                                                                                                                <  2:974866/140‑1 (MQ=255)
                                   tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCg                                                                                                        <  2:315408/140‑1 (MQ=255)
                                    atcacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACACAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCgg                                                                                                       <  1:578952/138‑1 (MQ=255)
                                           tAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAAccc                                                                                                >  1:90093/1‑140 (MQ=255)
                                                aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGG‑AT‑AACAAACAACTCCTTTTCCGGGGAACCCCAAca                                                                                           >  2:401160/1‑139 (MQ=255)
                                                aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGG‑AT‑AACAAAAAAACCCTTGTCCGGAGAAACCCAACg                                                                                           >  2:1380084/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACggg                                                                                         >  1:903246/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGC‑CT‑AACAAAAAAATCCTTTTCCGGAGAACCCCAACggg                                                                                         >  2:608438/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACggg                                                                                         >  1:713896/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGC‑AT‑AACAAAAAACTCCTTTTCCGGAGAACCCCAAAggg                                                                                         >  2:1186819/1‑140 (MQ=255)
                                                  cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGC‑AT‑AAAAAAAAAATCCTTGTCCGGAGAACCCCAACagg                                                                                         >  2:581361/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AAAAAACAACTCCTTGTCCGGAGAACCCCCACgggg                                                                                        >  1:474384/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGG‑AA‑AAAAAAAAACTCCCTTTCCGGGGAACCCCCACaggg                                                                                        >  2:342707/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAAACCCAACgggg                                                                                        >  1:960344/1‑140 (MQ=255)
                                                   ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGG‑ATAAAAAAAAAACCCCTTTTCCGGGGAAcccaacaggg                                                                                         >  2:520721/1‑133 (MQ=255)
                                                       gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGaaaa                                                                                    <  1:1394258/140‑1 (MQ=255)
                                                       gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGaaaa                                                                                    <  2:1143121/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                  <  2:1134040/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                  <  2:327074/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                  <  1:1014588/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                  <  1:1348004/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                  <  1:1049227/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                  <  1:1145264/140‑1 (MQ=255)
                                                         tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                  <  1:1298971/140‑1 (MQ=255)
                                                           gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGTGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACg                                                                                  >  1:806043/1‑138 (MQ=255)
                                                           gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGGGGC‑AA‑AAAAAACAACTCCCTTGCCGGAGAACCCCAAAGGGGgaaaaaaa                                                                                >  2:154535/1‑136 (MQ=255)
                                                           gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGG‑AT‑AAAAAAAAACTCCTTTTCCGGGGGACCCCAACGGGGGAAAAGaa                                                                                >  2:960093/1‑140 (MQ=255)
                                                            aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGaaa                                                                               >  1:45614/1‑140 (MQ=255)
                                                            aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGC‑AT‑AACAAACAACTCCTTGTCCGGGGAACCCCAACCGGGGAAAAGaaa                                                                               >  2:1014588/1‑140 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCCACGGGGAAAAAGaaaattaa                                                                          >  1:1033409/1‑135 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGCAAAAAACGCGGC‑CG‑AAAAAACAACCCCTTTGCCGGGGTACCCCAACAGGGGAAACAAAAtgtca                                                                          >  2:660112/1‑136 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGC‑AT‑AAAAAAAAACACCCTTTCCGGAGGACCCCCACGGGGGAAAAGAAAATCaa                                                                          >  2:576189/1‑140 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCGAA‑TAAAAAAAACACTTTG‑CCGCGGAACCCCCAGGGGGGAAACAAAAttata                                                                          >  2:206477/1‑137 (MQ=255)
                                                                 aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGG‑AT‑AAAAAACAAAACCTTGTCCGGAGAACCCCCACCGGGGAAAAGAAAATCaa                                                                          >  2:292857/1‑140 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATAcc                                                                      <  1:534416/140‑1 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATAcc                                                                      <  2:782227/140‑1 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AAAAAAAAACTCCTTGTCCGGAGAAACCCAACGGGGGAAACGAAATTCAATAcc                                                                      >  1:1263995/1‑140 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGC‑TA‑AAAAAAAAAACCCTTGTCCGGGGGAACCCAAAGGGGGAAAAGAAAATCaaaaac                                                                      >  2:1075812/1‑136 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGC‑AT‑AAAAAACAACTCCTTGTCCGGAGAAACCCCACGGGGGAAACGAAAATCAATaac                                                                      >  2:870588/1‑138 (MQ=255)
                                                                     gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGC‑AT‑AACAAACAACCCCTTGTCCGGAGAACCCCAACGGGGGAAACGAAAATCAATaac                                                                      >  2:1368788/1‑138 (MQ=255)
                                                                      tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGC‑AT‑AACAAAAAAATCCCTTTCCGGAGAACCCCCACGGGGGAAACGAAATTCAAAAccc                                                                     >  2:1186060/1‑139 (MQ=255)
                                                                           aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGt                                                                <  1:1186060/140‑1 (MQ=255)
                                                                           aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGt                                                                >  1:270900/1‑140 (MQ=255)
                                                                           aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGG‑AT‑AAAAAAAAAACCCTTTTTCCGAGAAACCCAACGGGGGAAAAGAAAATAAAAAACGTccgg                                                                >  2:1146408/1‑137 (MQ=255)
                                                                            gATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTa                                                               <  2:90093/140‑1 (MQ=255)
                                                                             aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                              <  1:1528051/140‑1 (MQ=255)
                                                                             aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGC‑AT‑AACAAAAAACTCCTTGTCCGGAGAACCCCAACGGGGGAAAAGAAAATCAATACCCTCGGGaa                                                              >  1:996815/1‑140 (MQ=255)
                                                                             aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGG‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAAATCAATACCCTCGGGaa                                                              >  1:200943/1‑140 (MQ=255)
                                                                                cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGa                                                           <  1:596259/140‑1 (MQ=255)
                                                                                  cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg                                                         <  2:783003/140‑1 (MQ=255)
                                                                                    gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa                                                       <  1:619286/140‑1 (MQ=255)
                                                                                     caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                      <  1:960093/140‑1 (MQ=255)
                                                                                       aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGC‑AT‑AAAAAAAAAATCCTTGTCCGGAGAAACCCAACGGGGGAAAAGAAAATCAATACCGTCGGGAATGACGaaaag                                                    >  2:572053/1‑138 (MQ=255)
                                                                                        aGTCATACAAAATCAACGCCATCGGGAAAAATAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGC‑AT‑AAAAAAAAAATCCTTGTCCCGAGGACCCCCACGGGGGAAAAAAAAATTAAAACCCTCGGGAATGACGAAAggg                                                   >  2:266546/1‑139 (MQ=255)
                                                                                        aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGG‑AT‑AAAAAAAAAATCCTTGTCCGGGGGACCCCCACGGGGAAAACGAAAATCAATAACGTCGGGAATGACGaaaagg                                                   >  2:1208624/1‑137 (MQ=255)
                                                                                          tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                 <  1:421310/140‑1 (MQ=255)
                                                                                          tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGC‑AT‑AAAAAAAAACTCCCTGTCCGGAGAACCCCAACGGGGGAAAAGAAAATCAATAACGTCGGTAATGACGAAAAGCAg                                                 >  2:619286/1‑140 (MQ=255)
                                                                                           cATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGC‑AT‑AAAAAAAAACTCCCTGTCCGGGGAACCCCAACGGGGGAAAAGAAAATCAATAACGGCGGTAATGACGAAAAGCAgg                                                >  2:673433/1‑140 (MQ=255)
                                                                                            aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt                                               <  2:45614/140‑1 (MQ=255)
                                                                                             tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACATGGC‑AT‑AAAAAAAAACTCCTTGTCCGGGGAACCCCAACGGGGAAAAAGAAAATCAATACCGTCGGTAATGACGAAAAGCAgggg                                              >  2:132234/1‑138 (MQ=255)
                                                                                                aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  2:1251027/140‑1 (MQ=255)
                                                                                                  aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                         <  2:903246/140‑1 (MQ=255)
                                                                                                    tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGC‑AT‑AACAAAAAACTCCTTGTCCGGGGAAACCCAACGGGGGAAACAAAATTCAATACCGTCGGTAATGACGAAAGGCAGGGGAGAAggg                                       >  1:987000/1‑140 (MQ=255)
                                                                                                    tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGG‑AT‑AAAAAAAAAACCCTTGTCCGGGGAACCCCCACGGGGGAAAAGAAAATCAATAACCTCGGTAATGAAGAAAAGCAGGGGAGAAagg                                       >  2:751882/1‑140 (MQ=255)
                                                                                                       aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                    <  1:608438/140‑1 (MQ=255)
                                                                                                        cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGC‑AT‑AAAAAACAAAACCTTTTCCGGGGAACCCCCACGGGGGAAAAGAAAATCAAAACCGTCGGGAATGAAGAAAAGCAGGggggaaggggaaa                                   >  2:1530691/1‑139 (MQ=255)
                                                                                                          ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  2:1345022/140‑1 (MQ=255)
                                                                                                           gacagggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACgag                                <  1:1405086/136‑1 (MQ=255)
                                                                                                             tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:673433/140‑1 (MQ=255)
                                                                                                                ggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGc                           <  1:811211/140‑1 (MQ=255)
                                                                                                                  aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  2:370367/140‑1 (MQ=255)
                                                                                                                       cAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGC‑AT‑AAAAAAAAACTCCTTGTCCGGAGAACCCCAACGGGGGAAAAGAAAATCAATACCGTCGGGAAAGACGAAAAGCAGGTGAGAAGGGCAAAGAGACTGCAAATGTa                    >  2:851424/1‑140 (MQ=255)
                                                                                                                        aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  1:315080/140‑1 (MQ=255)
                                                                                                                        aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  1:1075812/140‑1 (MQ=255)
                                                                                                                          cGTGGCGGCATGGAGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTg                 >  1:1221217/1‑140 (MQ=255)
                                                                                                                           gTGGCGGCATGGCGGGTAAAAAAAACGGGG‑GC‑AACAAACAACACCTTTTCCCGAGAAACCCCACGGGGGAAACGAAAATTAATACCGGCGGGAAAGAAAAAAGGCAGGGGAGAAGGGCAACGAGACTGCAAAAGtctgtc                >  2:1405086/1‑135 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:870588/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:423617/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:863859/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:1208624/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:1054354/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:1074166/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:289616/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:266546/140‑1 (MQ=255)
                                                                                                                                     ggCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:660112/140‑1 (MQ=255)
                                                                                                                                       cGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt    <  1:1186819/140‑1 (MQ=255)
                                                                                                                                        gggTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATc   <  2:302826/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                           
GCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGC‑AT‑AACAAACAACTCCTTGTCCGGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568365‑4568641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑