Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,580,095 | 0 | A | C | 24.1% | 126.2 / 10.3 | 58 | G456G (GGT→GGG) | hsdS | type I restriction enzyme EcoKI specificity protein |
Reads supporting (aligned to +/- strand): ref base A (31/13); new base C (0/14); total (31/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.98e-06 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
AAAATAGAATAAAATGGGCAATTTCTGGAATGATTTAAATATATTTATGTGGGTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCTTTTGCCAGGATGGA > NC_000913/4579957‑4580229 | aaaaTAGAATAAAATGGGCAATTTCTGGAATGATTTAAATATATTTATGTGGGTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTAc > 1:453776/1‑140 (MQ=255) aaaTAGAATAAAATGGGCAATTTCTGGAATGATTTAAATATATTTATGTGGGTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTAcc < 2:1376108/140‑1 (MQ=255) aaaTAGAATAAAATGGGCAATTTCTGGAATGATTTAAATATATTTATGTGGGTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTAcc < 2:453776/140‑1 (MQ=255) aaTAGAATAAAATGGGCAATTTCTGGAATGATTTAAATATATTTATGTGGGTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTAccc > 2:1262610/1‑140 (MQ=255) aaTAGAATAAAATGGGCAATTTCTGGAATGATTTAAATATATTTATGTGGGTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTAccc > 2:1507742/1‑140 (MQ=255) tGGGCAATTTCTGGAATGATTTAAATATATTTATGTGGGTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTgcg > 1:1137754/1‑140 (MQ=255) gCAATTTCTGGAATGATTTAAATATATTTATGTGGGTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGt > 1:672258/1‑140 (MQ=255) atTTATGTGGGTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AAcg > 2:620047/1‑140 (MQ=255) ttATGTGGGTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AAcgcg > 2:1510919/1‑140 (MQ=255) tgtgGGTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACgcggcg < 2:1332026/140‑1 (MQ=255) tgtgGGTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACgcggcg < 2:1311393/140‑1 (MQ=255) tgGGTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACgcggcggc < 2:300228/140‑1 (MQ=255) ggTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGgcgc > 2:950093/1‑140 (MQ=255) ggTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGgcgc > 2:575043/1‑140 (MQ=255) ggTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGGGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGgcgc > 1:1127484/1‑140 (MQ=255) ttATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTg > 1:714680/1‑140 (MQ=255) ttATGATTGGCGTGAAATAAT‑AAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCGCCTAGCTGGGCGTTCACCTTTG‑TTTTTTCCCGCAAACGCGGCGGCGCTGt > 2:217322/1‑140 (MQ=255) gATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGtttt > 1:1217108/1‑140 (MQ=255) ggCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTcc > 2:346789/1‑140 (MQ=255) gCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCg < 2:628245/140‑1 (MQ=255) gCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCg > 2:91793/1‑140 (MQ=255) gCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCg < 2:352755/140‑1 (MQ=255) cGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGc > 1:1512161/1‑140 (MQ=255) taaAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATc > 1:132426/1‑140 (MQ=255) cgcACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGttt > 2:873954/1‑140 (MQ=255) ggcccGGAAATGTGCCCCAAGAAATAATTTTCCGGATTTTTTACGTGGGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGtttt < 1:217322/137‑1 (MQ=255) gcACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGtttt < 1:553215/140‑1 (MQ=255) gcACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGtttt < 2:903447/140‑1 (MQ=255) cACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTc > 1:511898/1‑140 (MQ=255) ggAAGGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTCCCCCCGCTAGGTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGcc < 1:991915/140‑1 (MQ=255) ggAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGTTTTTCGGcc < 2:672258/140‑1 (MQ=255) ggcgcCAAAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTCCCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACt < 2:1087993/139‑1 (MQ=255) cgcCAGAAAATAATGTTCAGGATTTTTTACGTGAGGTTTTTTTACCCCCGCTAGCTGCGCTTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCCCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTgg < 1:1052596/140‑1 (MQ=255) cgcCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTCCCCCCGCTAGCTGCGCGTTCAGTTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGTTTTTCGGCCCGCCACTgg < 2:1512161/140‑1 (MQ=255) cgcCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTgg > 2:954839/1‑140 (MQ=255) cgcCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTgg > 1:1031328/1‑140 (MQ=255) cgcCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTgg > 2:1273671/1‑140 (MQ=255) cgcCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTgg > 1:1259034/1‑140 (MQ=255) ccAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTCCCCCCGCTAGCTGCGCGTTCAGTTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTTTTTTCTCCGCTGATCAAATCCGGTTTTTCGGCCCGCCACTGGGc < 2:1137754/140‑1 (MQ=255) ccAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGtttt > 2:697011/1‑124 (MQ=255) ccAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGtttt < 1:697011/124‑1 (MQ=255) aataatGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAg > 1:1096777/1‑140 (MQ=255) atGTTCAGGATTTTTTACGTGAGGCTTTTTTCCCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTca < 1:135791/140‑1 (MQ=255) aGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACgg > 1:1015179/1‑140 (MQ=255) ggATTTTTTACGTGAGGCTTTTTTCCCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGTTTTCCGGCCCGCCACTGGGCGGTAAGTTCACCACGGa < 2:261785/140‑1 (MQ=255) gATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGaa > 1:1526612/1‑140 (MQ=255) ttttttACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACg < 1:1510919/140‑1 (MQ=255) ttttAGGTGAGGCTTTTTTCCCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑ACCGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCGGGTTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCt < 2:959267/140‑1 (MQ=255) ttttACGTGAGGCTTTTTTCCCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCt < 2:1031328/140‑1 (MQ=255) tttACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCtt > 2:1046766/1‑140 (MQ=255) aCGTGAGGTTTTTTTCCCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTCCCAGC‑ACCGCGGCGGCGCTTTTTTCTCCGCTGATCAAATCGGGTTTTTGGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCTTTTg < 2:175368/140‑1 (MQ=255) gTGAGGTTTTTTTCCCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTCCCAGC‑AACGCGGCGGCGCTTTTTTCTCCGCTGATCAAACCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCTTTTGcc < 2:1015179/140‑1 (MQ=255) gTGAGGCTTTTTTCCCCCCGCTAGCTGCGCGTTCAGCTTTGTTTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGTTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCTTTTGcc < 2:256785/140‑1 (MQ=255) gTGAGGCTTTTTTCCCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCTTTTGcc < 1:131161/140‑1 (MQ=255) gTGAGGCTTTTTTCCCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTCCCAGC‑ACCGCGGCGGCGCTGTTTTCCCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCTTTTGcc < 1:156811/140‑1 (MQ=255) gTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCTTTTGcc > 1:1132983/1‑140 (MQ=255) gTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCTTTTGcc > 2:131161/1‑140 (MQ=255) gggCTTTTTTCCCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCTTTTGCCAgg < 1:324176/139‑1 (MQ=255) gCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCTTTTGCCAggat > 1:784070/1‑140 (MQ=255) tttttCCCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCTTTTGCCAggatgga < 1:557764/140‑1 (MQ=255) | AAAATAGAATAAAATGGGCAATTTCTGGAATGATTTAAATATATTTATGTGGGTTATGATTGGCGTGAAATAATAAAAAGCGCACCGGAAAGGTGCGCCAGAAAATAATGTTCAGGATTTTTTACGTGAGGCTTTTTTACCCCCGCTAGCTGCGCGTTCAGCTTTGATTTTTTCCAGC‑AACGCGGCGGCGCTGTTTTCTCCGCTGATCAAATCCGGGTTTTCGGCCCGCCACTGGGCGGTAAGTTCACCACGGAACGCTTTTGCCAGGATGGA > NC_000913/4579957‑4580229 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |