| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 29.1% | 146.5 / 33.7 | 87 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| Reads supporting (aligned to +/- strand): ref base C (14/47); new base T (25/0); total (40/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.90e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCAT > NC_000913/4604210‑4604481 | cGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttcttttt < 1:1015669/140‑1 (MQ=255)cGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATtttttcttttt < 1:487653/140‑1 (MQ=255) tCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGTTAACCCTTATAAGCTCCATACCTATACTAGTCAGGAGTAATTTCAGTATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGt < 2:844109/140‑1 (MQ=255) ccGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATGCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGt < 1:525832/139‑1 (MQ=255) cGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TTGCATGAGAAgag > 2:563708/1‑138 (MQ=255) ggTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGa < 1:776940/140‑1 (MQ=255) gTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAg > 1:187073/1‑140 (MQ=255) gTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAg > 1:1095136/1‑140 (MQ=255) tttGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGGGAgcg > 1:426743/2‑140 (MQ=255) gagacaggTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAgcg < 1:780471/133‑1 (MQ=255) aTTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TTCCATGAGAAGTGAgcg > 1:1214206/1‑140 (MQ=255) aTTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TGGCCTGGGAAgatagac > 1:437430/1‑134 (MQ=255) aTTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTC‑TTCCCTGAGAAGTGAgcg > 2:65897/1‑140 (MQ=255) aTTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGCCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAgcg < 1:341509/140‑1 (MQ=255) tGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCa < 1:896951/140‑1 (MQ=255) tGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCa < 2:720812/140‑1 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGTTCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TGCCCTTAGAAGTGGGCGCag > 2:16424/1‑140 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TTCCATGAGAAGGGAGGGCag > 1:555792/1‑140 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TGCCGTGGGGAGGGAGGGCag > 2:1190204/1‑140 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TGCCCTGAGAAGTGAGCGCag > 1:936090/1‑140 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TGCCATGAGAAGGGAgcgccg > 1:22539/1‑138 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTC‑TTCCATGAGAAGGGAGCGCag > 2:1099957/1‑140 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTC‑TGCCATGAGAAGTGAGCGCag > 2:863889/1‑140 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTC‑TGCCATGAGAAGTGAGCGCag > 1:995252/1‑140 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTT‑TGCCATGAGAAGTGAGCGCag > 1:982408/1‑140 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCag < 1:863889/140‑1 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCag > 1:1261170/1‑140 (MQ=255) agagTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCaga > 1:995631/1‑140 (MQ=255) agagTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCaga < 1:775799/140‑1 (MQ=255) gagTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCagag < 2:96690/140‑1 (MQ=255) gagTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCagag < 2:187073/140‑1 (MQ=255) gagTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCagag < 1:65897/140‑1 (MQ=255) gTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTC‑TGCCCTGAGAAGTGAGGGCcgagag > 2:509951/1‑140 (MQ=255) tttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGGCCTTTTTTTTTTTTC‑TTGCATGGGAAGGGAGGGCGGAgggg > 2:18432/1‑140 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TTCCATGAGAAGGGAGCGCAGAGAggg > 2:775799/1‑140 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAggg > 2:834878/1‑140 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTT‑TTCCATGAGAAGAGAGGGCAGAGAggg > 1:1070114/1‑140 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAggg < 2:1196607/140‑1 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAggg < 1:947219/140‑1 (MQ=255) tATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAgggg < 2:1261170/140‑2 (MQ=255) tATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGa > 1:174383/1‑140 (MQ=255) aaGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTg < 1:815699/140‑1 (MQ=255) aaGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTg < 1:530641/140‑1 (MQ=255) aaGTTTGC‑GGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGc < 2:1152701/140‑1 (MQ=255) aGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGc < 1:834878/140‑1 (MQ=255) aGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGc < 2:1010442/140‑1 (MQ=255) ttGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTCTTTTTC‑TGCCATGAGAAGTGAGGGCAGAGGGGGGTTATCTTGCctg > 1:334925/1‑140 (MQ=255) ttGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TTCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCctg > 1:1030618/1‑140 (MQ=255) ttGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCctg > 1:356205/1‑140 (MQ=255) tGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TTCCATGAGAAGTGAGCGCCGAGAGGGGTTATCTTGCctgt > 2:776954/1‑139 (MQ=255) tAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGTTCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAAc < 1:16424/140‑1 (MQ=255) tAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAAc < 1:417520/140‑1 (MQ=255) aaCCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCGTGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACt < 1:1190204/140‑1 (MQ=255) ccTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGc < 2:1055346/140‑1 (MQ=255) gCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGt < 2:174383/140‑1 (MQ=255) tCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGACTTTTTTTTTTTTTT‑TGGCGCGGGGAGGGGGGGGGGGGGGGGGGTATCTTTCCTGACTGGACTGGCGATTAAAttt > 2:238619/1‑140 (MQ=255) cATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGA‑GGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCcg < 1:471722/140‑1 (MQ=255) ataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TGCCCTGAGGAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGGACTGGGGATTTAGGTTCCCCGTAcc > 2:548654/1‑140 (MQ=255) ataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTAcc < 1:600245/140‑1 (MQ=255) taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTAccc < 1:509951/140‑1 (MQ=255) taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGCCACTTTTTCTTTTTT‑TTTCATGAGAAGTGAGGGCGGAGAGGGATGATATTGCCTCATTTAACCTGAGATTAAGTTTCCGCCTAccc > 2:1101154/1‑140 (MQ=255) aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCg < 1:836864/140‑1 (MQ=255) gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCCTTTTTTTTTTTTCTTTACCAGGGAA‑TGAGCGGAGAGCGGGGGTATCTTTCCCGACTAAACAGGCGATTACGATTTCCCGTACCCGGCGt > 2:591368/1‑140 (MQ=255) gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TGCCATGAGAAGTGAGCGCAGAGAGGGGTTATTTTTCCTGACTGAACTGGCGATTAAGTTTCCCCGTACCCGGCGt > 2:836864/1‑140 (MQ=255) cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TGCCCTGAGAAGTGAGCGCAGAGGGGGGTTATCTTTCCTGACTGAACTGGCGATTAAGTTTTCCCGTACCCCGCGttt > 2:1217354/1‑140 (MQ=255) cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TGCCACTAGAAGTGAGCGCAGAGAGGGGTTTTCTTTCCTGGCTGAACTGGCGGTTAAGTTTTCGCGTACCCGGCGttt > 2:42454/1‑140 (MQ=255) gAGTCATTTCAGGGTGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TTTCATGAGAAGATTGCGCACAGAGGGGGTATTTTTTCTGTCTGTAGTTGCGGTTTAATTTCCTCGTACCCGGCGTTTTGt > 2:1127377/1‑140 (MQ=255) cATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTAtt < 2:1095136/140‑1 (MQ=255) cATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTAtt < 1:338613/140‑1 (MQ=255) tcggATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGga < 1:1264284/138‑1 (MQ=255) cAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGga < 1:1002297/140‑1 (MQ=255) aGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgat < 2:995631/140‑1 (MQ=255) gATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatga < 2:1214206/140‑1 (MQ=255) gATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatga < 1:544044/140‑1 (MQ=255) aTGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatgat < 1:610812/140‑1 (MQ=255) aTGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatgat < 1:18432/140‑1 (MQ=255) aTGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatgat < 1:1083364/140‑1 (MQ=255) tGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TTCCATGAGAAGGGAGCGCCGGGGGGGGTTATCTTTCCTGACTGAACTGGCGGTTAAGGTTTCGCGTACCCCGCGTTTTGTTATTTCGggtgatg > 2:628076/1‑140 (MQ=255) tGCCATGTCGCGGAGCTCGTTTGCGGCGGTAATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACGGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatgatg < 2:437430/140‑1 (MQ=255) gCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TTCCATGAGAAGGGGGGGCAGAGAGGGGTTATTTTGCCTGACTGAACTGGCGATTAAGTTTTCGCGTACCCCGCGGTTTGTTTTTTCGggtgatgg > 2:638561/1‑139 (MQ=255) cATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TTCCATGAGAAGTGAGCGCAGAGAGGGGTTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCCCGTACCCCGCGGTTAGTTATTTCGGATGATGata > 2:1083364/1‑140 (MQ=255) cATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTC‑TGCCATGAGAAGGGGGCGCAGAGAGGGGTTATCTTTCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTTCGgatgatgatt > 2:692574/1‑139 (MQ=255) tGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TGCCATGAGAAGGGAGCGCAGAGAGGGGTTATCTTGCCTGACTGAACTGGCGGTTAAGGTTTCGCGGACCCCGCGGTTTGTTTTTTCGGGTGATGATAtt > 2:978784/1‑140 (MQ=255) cgGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGc < 1:978784/140‑1 (MQ=255) gATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TTCCCTGAGAAGGGGGGGCTGAGGGGGGTTATCTTTCCTGACTGTACTGGCGGTTAAATTTTCGCGTACCCCGCGTTTTGTTTTTGTGGGTGATGGTATTTAAGCTc > 2:1239317/1‑140 (MQ=255) gATCTCGTTTGCGGCGGTCATTTTTTTTTTTTT‑TGCCCTGAGAAGTGAGCGCAGAGAGGGGTTATCTTTCCTGACTGAACTGGCGATTAAGGTTTCGCGTACCCGGCGGTTTGTTATTTCGGGTGGTGATATTGAAGCTc > 2:996780/1‑140 (MQ=255) ctcGTTTGCGGCGGTCATTTTTTCTTTTTT‑TGCCATGAGAAGGGAGCGGAGAGGGGGAGTATTTTTCCTGACTGAACTGGGGATTTAGTTTTCGCGTACCCGGCGTTTTTTTTTTTCGGGTGATGATTTTTAAGCTCggg > 2:1162203/1‑139 (MQ=255) tcGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCt < 1:591368/140‑1 (MQ=255) tcGTTTGCGGCGGTCATTTTTT‑TTTTT‑‑TTCCATGAGAAGGGAGCGCCGAGGGGGGTTATCTTTTCTGACTGAACTGGGGATTAAGTTTCCGCGTACCCGGCGGTTAGTTATTTCGGATGGTGATATTGAAACATGGCTgg > 2:554396/1‑139 (MQ=255) cggcggTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGGTTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCCGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGt > 2:215323/1‑140 (MQ=255) cggcggTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGt < 1:1059086/140‑1 (MQ=255) cggcggTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGt < 1:1239317/140‑1 (MQ=255) ggcggTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGtt < 2:356205/140‑1 (MQ=255) gcggTGAATTTTTTTTTTTC‑TTTCCTGGGAAGTGGGCGCAGGGAGGGATTATTTTGCCTGACTGAACTGGCGATTAAAGTTTCGCGTACCCGGCGTTTTGTTATTGCGGATGATGGTATTTAAGCCCGGGTggttggttt > 2:1286617/1‑139 (MQ=255) gTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCAtt < 2:334925/140‑1 (MQ=255) aTTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTc < 1:996780/140‑1 (MQ=255) ttctttttc‑tGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCAt < 1:1101154/140‑1 (MQ=255) | CGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTCATTTTTTCTTTTTC‑TGCCATGAGAAGTGAGCGCAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCAT > NC_000913/4604210‑4604481 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |