Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,033,505	C→A	intergenic (‑21/‑144)	yedR ← / → rseX	putative inner membrane protein/small regulatory RNA RseX

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,033,505	0	C	A	100.0%	328.2 / NA	91	intergenic (‑21/‑144)	yedR/rseX	putative inner membrane protein/small regulatory RNA RseX
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (46/45);  total (46/45)

CGAGAGAGTCTCTCTTCCATCTTTGTCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTA  >  NC_000913/2033381‑2033638                                                                                                                                  |                                                                                                                                      cGAGAGAGTCTCTCTTCCATCTTTGTCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGa                                                                                                                        <  1:1401322/140‑1 (MQ=255)   agagagTCTCTCTTCCATCTTTGTCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAAc                                                                                                                      >  1:1109234/1‑140 (MQ=255)    gagagTCTCTCTTCCATCTTTGTCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACa                                                                                                                     <  2:1362376/140‑1 (MQ=255)     agagTCTCTCTTCCATCTTTGTCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACaa                                                                                                                    <  1:290567/140‑1 (MQ=255)      gagTCTCTCTTCCATCTTTGTCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACaaa                                                                                                                   <  2:1025894/140‑1 (MQ=255)                   aTCTTTGTCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTg                                                                                                      >  2:448979/1‑140 (MQ=255)                      tttGTCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTgcgc                                                                                                   >  1:244785/1‑140 (MQ=255)                        tGTCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCaa                                                                                                 <  2:1733883/140‑1 (MQ=255)                        tGTCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCaa                                                                                                 <  1:448979/140‑1 (MQ=255)                        tGTCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCaa                                                                                                 <  1:79500/140‑1 (MQ=255)                         gTCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTg                                                                                                      <  2:703296/134‑1 (MQ=255)                         gTCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTg                                                                                                      >  1:703296/1‑134 (MQ=255)                          tCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACg                                                                                               <  1:1142816/140‑1 (MQ=255)                          tCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACg                                                                                               >  2:1761302/1‑140 (MQ=255)                          tCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACg                                                                                               <  1:458763/140‑1 (MQ=255)                             aaCCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCCAGTCAAGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCaa                                                                                                 >  1:1696193/1‑140 (MQ=255)                             aaCCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCa                                                                                            <  2:115131/140‑1 (MQ=255)                             aaCCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCa                                                                                            <  2:244785/140‑1 (MQ=255)                                cGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTg                                                                                         >  2:1622712/1‑140 (MQ=255)                                   aTTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAAt                                                                                      >  2:993051/1‑140 (MQ=255)                                          tttGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGaa                                                                               >  1:1037434/1‑140 (MQ=255)                                            tGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGaaaa                                                                             >  1:859763/1‑140 (MQ=255)                                            tGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGaaaa                                                                             >  1:1465386/1‑140 (MQ=255)                                            tGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGaaaa                                                                             >  1:262873/1‑140 (MQ=255)                                                 tAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGt                                                                        >  1:847603/1‑140 (MQ=255)                                                        gAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGc                                                                 >  2:303468/1‑140 (MQ=255)                                                           aaTTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGAt                                                              <  2:847603/140‑1 (MQ=255)                                                           aaTTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGAt                                                              <  1:1543739/140‑1 (MQ=255)                                                            aTTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGAtt                                                             <  1:1163266/140‑1 (MQ=255)                                                                  aCTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATtttattt                                                       <  1:1525462/140‑1 (MQ=255)                                                                      aGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCt                                                   <  1:823027/140‑1 (MQ=255)                                                                            attatGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGata                                             <  1:1011827/140‑1 (MQ=255)                                                                            attatGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGata                                             >  2:1849480/1‑140 (MQ=255)                                                                               atGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCg                                          <  1:993051/140‑1 (MQ=255)                                                                                tgtgATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCgg                                         >  2:1819080/1‑140 (MQ=255)                                                                                tgtgATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCgg                                         >  1:115553/1‑140 (MQ=255)                                                                                tgtgATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCgg                                         >  2:561544/1‑140 (MQ=255)                                                                                tgtgATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCgg                                         >  1:1664213/1‑140 (MQ=255)                                                                                 gtgATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGc                                        <  1:622089/140‑1 (MQ=255)                                                                                  tgATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCttt                                                 >  2:949256/1‑130 (MQ=255)                                                                                  tgATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCttt                                                 <  1:949256/130‑1 (MQ=255)                                                                                  tgATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCt                                       >  2:1927332/1‑140 (MQ=255)                                                                                  tgATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCt                                       >  2:1476411/1‑140 (MQ=255)                                                                                  tgATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCt                                       >  2:1045406/1‑140 (MQ=255)                                                                                  tgATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCt                                       >  2:912785/1‑140 (MQ=255)                                                                                  tgATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCt                                       >  2:956807/1‑140 (MQ=255)                                                                                  tgATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCt                                       >  2:1215346/1‑140 (MQ=255)                                                                                  tgATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCt                                       >  1:644603/1‑140 (MQ=255)                                                                                    aTAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCttt                                     >  2:1757323/1‑140 (MQ=255)                                                                                     tAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTtta                                    >  2:82237/1‑140 (MQ=255)                                                                                     tAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTtta                                    >  2:760562/1‑140 (MQ=255)                                                                                     tAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTtta                                    >  2:1390906/1‑140 (MQ=255)                                                                                       aaaGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTttatt                                  >  1:1392758/1‑140 (MQ=255)                                                                                       aaaGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTttatt                                  >  2:472427/1‑140 (MQ=255)                                                                                       aaaGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTttatt                                  >  1:215947/1‑140 (MQ=255)                                                                                         aGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTaa                                <  1:912785/140‑1 (MQ=255)                                                                                         aGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTaa                                <  1:1052128/140‑1 (MQ=255)                                                                                         aGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTaa                                <  2:115553/140‑1 (MQ=255)                                                                                                 ttttCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTa                        <  1:1045406/140‑1 (MQ=255)                                                                                                   ttCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAAt                      <  1:1622712/140‑1 (MQ=255)                                                                                                   ttCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAAt                      <  1:303468/140‑1 (MQ=255)                                                                                                   ttCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAAt                      <  1:772860/140‑1 (MQ=255)                                                                                                      cacaTTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCaa                   <  2:1109234/140‑1 (MQ=255)                                                                                                      cacaTTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCaa                   <  2:1664213/140‑1 (MQ=255)                                                                                                      cacaTTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCaa                   <  1:1215346/140‑1 (MQ=255)                                                                                                      cacaTTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCaa                   <  1:1761302/140‑1 (MQ=255)                                                                                                      cacaTTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCaa                   <  1:1927332/140‑1 (MQ=255)                                                                                                      cacaTTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCaa                   <  2:215947/140‑1 (MQ=255)                                                                                                         aTTGGATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAatat                >  2:920780/1‑140 (MQ=255)                                                                                                             gATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTa            >  1:1353696/1‑140 (MQ=255)                                                                                                             gATGAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTa            >  1:1105092/1‑140 (MQ=255)                                                                                                                gAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa         <  2:1918535/140‑1 (MQ=255)                                                                                                                gAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa         <  2:49629/140‑1 (MQ=255)                                                                                                                gAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa         <  2:1105092/140‑1 (MQ=255)                                                                                                                gAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa         <  2:728571/140‑1 (MQ=255)                                                                                                                gAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa         >  1:1148660/1‑140 (MQ=255)                                                                                                                gAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa         <  2:1392758/140‑1 (MQ=255)                                                                                                                gAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa         <  1:1757323/140‑1 (MQ=255)                                                                                                                gAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa         <  1:1623521/140‑1 (MQ=255)                                                                                                                gAGCC‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTGTGAGCGATTTTATTTATATTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa         <  2:1439510/140‑1 (MQ=255)                                                                                                                   cc‑‑‑‑‑AGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTg      >  1:322168/1‑140 (MQ=255)                                                                                                                          aGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGAt    <  1:1509897/140‑1 (MQ=255)                                                                                                                          aGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGAt    <  1:920780/140‑1 (MQ=255)                                                                                                                          aGTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGAt    >  1:573632/1‑140 (MQ=255)                                                                                                                           gTCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGAtt   <  2:1037434/140‑1 (MQ=255)                                                                                                                            tCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa         <  1:211877/133‑1 (MQ=255)                                                                                                                            tCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCa         >  2:211877/1‑133 (MQ=255)                                                                                                                            tCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTa  >  2:423866/1‑140 (MQ=255)                                                                                                                            tCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTa  >  2:780378/1‑140 (MQ=255)                                                                                                                            tCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTa  >  1:162273/1‑140 (MQ=255)                                                                                                                            tCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTa  >  1:1721022/1‑140 (MQ=255)                                                                                                                            tCAAGAATCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTa  >  2:1474566/1‑140 (MQ=255)                                                                                                                                  |                                                                                                                                      CGAGAGAGTCTCTCTTCCATCTTTGTCGAACCGTATTCCATTTTGAGATAACCCGGAAAATTCAGACTTAGTACTATTATGTGATAAAAGTCACATTTTTCCACATTGGATGAGCC‑‑‑‑‑AGTCAAGACTCAATCATTTTTTGAACAAATAGATAAATTTTGCGCAACGGCAGTGAATACAGGAAAAATCGTTTTGAGCGATTTTATTTATCTTTGATATCGGCTTTATTAATTCATTTAATCAATATATTAGCACTGATTA  >  NC_000913/2033381‑2033638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑