| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,568,504 | 0 | T | G | 33.0% | 150.2 / 15.4 | 90 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| Reads supporting (aligned to +/- strand): ref base T (19/40); new base G (29/0); total (50/40) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.81e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAG‑AAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTA > NC_000913/4568367‑4568637 | agGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGTTaa > 2:1395700/1‑140 (MQ=255)agGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaa > 2:951286/1‑140 (MQ=255) ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa < 1:444042/140‑1 (MQ=255) aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg < 2:244340/140‑1 (MQ=255) gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa < 1:960018/140‑1 (MQ=255) aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCaa > 2:981988/1‑139 (MQ=255) cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAT‑a > 1:999134/1‑140 (MQ=255) tCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑aac < 1:727783/140‑1 (MQ=255) tCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑aac < 2:1497410/140‑1 (MQ=255) ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑aacaa < 2:200218/140‑1 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg < 1:766239/128‑1 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg > 2:766239/1‑128 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCAT‑aacaaa > 2:1370905/1‑140 (MQ=255) cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑aacaaac < 2:1543584/140‑1 (MQ=255) aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTcc < 1:981988/140‑1 (MQ=255) aaTCACGTACCACATTAATGATCCCAGGCTGGATAAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTcc < 1:701350/140‑1 (MQ=255) aCGTACCACATTAATGATCCCAGGCTGGATAAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGGAT‑AACAAAAAAACCCtttt > 2:701350/1‑138 (MQ=255) agcaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑Ggag < 1:69702/138‑1 (MQ=255) agcaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑Ggag < 1:506739/138‑1 (MQ=255) caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAT‑AACAAACAACACCTTTTCC‑GGAGaa > 2:299936/1‑140 (MQ=255) aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCAT‑AAAAAAAAACTCCTTGTCC‑GGGGaaa > 2:1196739/1‑139 (MQ=255) ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAAcc < 1:723828/140‑1 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCAT‑AACAAAAAAATCCTTTTCC‑GGGGAACCCCAACg > 2:906905/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGGAAAAAAAGTGGGAT‑AAAAAAAAACTCCTTGTCC‑GGAGAACCCCCACg > 1:403142/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGGGGCAT‑AACAAACAAACCCTTGTCC‑GGGGAACCCCAACg > 2:384017/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACggg > 1:887335/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACggg > 1:1249126/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAT‑AACAAAAAACTCCTTGTCC‑CGAGAAACCCAACggg > 2:719129/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAACGGCAT‑AAAAAAAAAATCCTTGTCC‑GGGGAAACCCAAAggg > 2:1368906/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTTGCGGCATGGCGGGTAAAAAAAAGTGGCAT‑AAAAAAAAACCCCTTGTCC‑CGGGAACCCCCACgggg > 1:1324517/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACgggg > 1:1350424/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACgggg > 1:953472/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCAT‑AAAAAAAAACTCCTTGTCC‑GGGGAACCCCAACgggg > 2:1232513/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCAT‑AAAAAAAAAAACCTTTTCC‑GGAGAACCCCCACgggg > 2:1117473/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCAT‑AACAAAAAACTCCTTGTCC‑GGGGAAACCCAAcagcg > 2:506739/1‑136 (MQ=255) cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCAT‑AACAAAAAAACCCCTGTCC‑GGAGAACCCCAACcgggg > 2:632132/1‑139 (MQ=255) aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGGAT‑AAAAAAAAACTCCTTGTCC‑GGAGAACCCCAACggggga > 1:1025336/1‑138 (MQ=255) aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGaa > 1:485952/1‑140 (MQ=255) ggCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGGATAAAAAAAAAAACCCTTTTCC‑GGGGAACCCCAAGGGGGaa > 2:756419/1‑140 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACg < 1:1370905/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACg < 2:12815/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACg < 1:1196739/140‑1 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACg < 2:293672/140‑1 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAT‑AACAAAAAACACCTTGTCC‑GGGGAACCCCAACGGGGAAAACGaa > 2:29638/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAT‑AAAAAACAACTCCTTGTCC‑GGAGAAACCCCACGGGGAAAAAGaa > 1:526631/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAT‑AAAAAAAAAATCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGaa > 2:149293/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGAGAAAAAAAGTGGGAC‑AACAAAAAACCCCTTTTCC‑GGAGAACCCCCACGGGGGAAAAGaa > 2:280100/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCTTGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGaaa > 1:1203314/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGNCGGGGAAAAAAAAGTGGGAT‑AACAAAANNATCCTTTTCC‑GGAGAACCCCCACGGGGAAAAAGaaa > 2:380157/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGGGGGAT‑AAAAAAAAAATCCTTTTCC‑GGAGAACCCCTACCGGGTAAACGaaa > 2:103318/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCAT‑AAAAAACAAAACCTTTTCC‑GGGGAACCCCAACGGGGGAAAAGaaa > 2:26549/1‑140 (MQ=255) gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCa < 1:951286/140‑1 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAAAAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCaa > 1:1386685/1‑140 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAAAGAAATTCAATAcc > 1:655870/1‑140 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCGT‑AAAAAACAACACCTTGTCC‑GGAGAACCCCAACAGGGAAAAAAAAAATCAATAccc > 2:1100159/1‑139 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAA‑AACAAAAAACCCCTTGTCCGGGGGACCCCCAACGGGGAAAAC‑AAAATCAATAccc > 2:662404/1‑139 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCAT‑AACAAACAACTCCTTGTCC‑GGGGAAACCCCACGGGGGAAAAGAAAATCAAAAccc > 2:977854/1‑139 (MQ=255) gagacaggTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg < 1:584636/133‑1 (MQ=255) cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg < 1:380157/140‑1 (MQ=255) cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg < 1:1117473/140‑1 (MQ=255) gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa < 2:1350424/140‑1 (MQ=255) gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa < 2:953472/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa < 1:26549/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa < 2:1386685/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa < 1:280100/140‑1 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGGAT‑AAAAAAAAAATCCTTGTCC‑GGGGAAACCCAACGGGGGAAAAGAAAATCAATAACGTCGGGAATGACGaaaag > 2:1101362/1‑138 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGGAT‑AACAAAAAAATCCCTTGCC‑GGGGGACCCCCACGGGGAAAAAGAAATTCAATAACCTCGGGAATTACCaaaag > 2:691682/1‑138 (MQ=255) aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAATGGCAT‑AAAAAAAAAATCCTTGTCC‑GGAGAACCCCCACGGGGAAAAAGAAAATCAAAACCCTCGGGAATGACGaaaagg > 2:1263529/1‑137 (MQ=255) aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGGAAACGAAATTCAATACCGTCGGTAATGACGAAAGGc > 1:191470/1‑140 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGTTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag‑a < 1:1395700/140‑1 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag‑a < 2:485952/140‑1 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag‑a < 1:691682/140‑1 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAAAGAAATTCAATACCGTCGGGAATGACGAAAGGCAGGGGAG‑AAggg > 1:1431956/1‑140 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAT‑AAAAAAAAAATCCTTGTCC‑GGGGAACCCCCACGGGGGAAAAGAAAATCAAAAACGTCGGGAATGACGAAAAGCAGGGGGG‑AAagg > 2:727298/1‑140 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAAAGTGGCAT‑AAAAAACAAATCCTTGTCC‑GGGGAACCCCAACGGGGAAAAAGAAAATCAATACCCTCGGGAATGACGAAAAGGAGGGGAG‑AAggg > 2:880115/1‑140 (MQ=255) aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAG‑AAGGGCaa < 1:756419/140‑1 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAT‑AAAAAACAACTCCTTGTCC‑GGAGAACCCCCACGGGGGAAAAGAAAATCAATAACGTCGGTAATGACGAAAAGCAGGGGAG‑AAGGGGaaa > 2:708815/1‑139 (MQ=255) ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAG‑AAGGGCAACga < 1:1101362/140‑1 (MQ=255) cATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAG‑AAGGGCAACgag < 1:977854/140‑1 (MQ=255) tCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGGGGCAT‑AAAAAAAAACCCCTTGTCC‑GGAGAACCCCCACGGGGGAAAAGAAAATCAAAAACGTCGGGAATGACGAAAAGCAGGGGAGAAAGGGAAACgaaa > 2:193002/1‑138 (MQ=255) gAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAG‑AAGGGCAACGAGACTGCa < 1:632132/140‑1 (MQ=255) aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAG‑AAGGGCAACGAGACTGCaa < 1:771044/140‑1 (MQ=255) aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAG‑AAGGGCAACGAGACTGCaa < 2:526631/140‑1 (MQ=255) aCAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCAT‑AACAAACAACTCCTTGTCC‑GGGGAACCCCAACGGGGGAAAAGAAAATCAAAAACGTCGGGAATGACGAAAAGCAGGGGAG‑AAGGGGAACGAGACTGCAAAAGt > 2:299214/1‑140 (MQ=255) tGGCGGCATGGCGGGTAAAAAAAAGTGGCGT‑AAAAAAAAACACCTTTTCC‑GGGGGACCCCCACGGGGGAAACGAAAATCAATAACCTCGGGAATAACGAAAGGGAGGGGGG‑AAAGGGAAAGAGAACGCAAATGTACTGaa > 2:888790/1‑140 (MQ=255) cggcATGGCGTGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAG‑AAGGGCAACGAGACTGCAAATGTACTGAAttt > 2:1293997/1‑140 (MQ=255) ggcATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAG‑AAGGGCAACGAGACTGCAAATGTACTGAATTTc < 2:1324517/140‑1 (MQ=255) gcATGGCGGGGAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑CGAGAACCCCCACGGGGGAAAAGAAAATCAATACCGTCGGGAATGACGAAAGGCAGGGGAG‑AAAGGGAACGAGATTGCAAAAATACTTGAttttt > 2:944173/1‑138 (MQ=255) aTGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAG‑AAGGGCAACGAGACTGCAAATGTACTGAATTTCATg < 1:1263529/140‑1 (MQ=255) ggCGTGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAG‑AAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:1293997/140‑1 (MQ=255) ggCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAG‑AAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:1100159/140‑1 (MQ=255) ggCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAG‑AAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:880115/140‑1 (MQ=255) | AGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCC‑GGAGAACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAG‑AAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTA > NC_000913/4568367‑4568637 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |