New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | 3616309 = | 112 (1.050) | 3 (0.030) | 3/268 | 9.6 | 3.4% | coding (128/834 nt) | nikC | Ni(2(+)) ABC transporter membrane subunit NikC |
? | NC_000913 | = 3618249 | 63 (0.610) | coding (474/807 nt) | nikE | Ni(2(+)) ABC transporter ATP binding subunit NikE | |||||
Rejected: Coverage evenness skew score above cutoff. | |||||||||||
Rejected: Frequency below/above cutoff threshold. |
GCCCTAATGTCAGCACCAGCAGCAGGCAGGCCATTACCGAACCGAGCGACACGCGGGTCGCTGCCATCAGCCGCGAGAAAATATCGCGACCTAAGTGATCGGTGCCCAGCCAGTGCTGCGCATCCGGCGAAAGCAGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3616449‑3616309 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCAC < NC_000913/3618249‑3618113 GCCCTAATGTCAGCACCAGCAGCAGGCAGGCCATTACCGAACCGAGCGACACGCGGGTCGCTGCCATCAGCCGCGAGAAAATATCGCGACCTAAGTGATCGGTGCCCAGCCAGTGCTGCGCATCCGGCGAAAGCAGGCGC < 1:1093366/140‑1 GCCCTAATGTCAGCACCAGCAGCAGGCAGGCCATTACCGAACCGAGCGACACGCGGGTCGCTGCCATCAGCCGCGAGAAAATATCGCGACCTAAGTGATCGGTGCCCAGCCAGTGCTGCGCATCCGGCGAAAGCAGGCGC > 1:203157/1‑140 GCCCTAATGTCAGCACCAGCAGCAGGCAGGCCATTACCGAACCGAGCGACACGCGGGTCGCTGCCATCAGCCGCGAGAAAATATCGCGACCTAAGTGATCGGTGCCCAGCCAGTGCTGCGCATCCGGCGAAAGCAGGCGC > 2:471467/1‑140 caCTAATGTCAGCACCAGCAGCAGGCAGGCCATTACCGAACCGAGCGACACGCGGGTCGCTGCCATCAGCCGCGAGAAAATATCGCGACCTAAGTGATCGGTGCCCAGCCAGTGCTGCGCATCCGGCGAAAGCAGGCGCG > 2:1175948/3‑140 CCCTAATGTCAGCACCAGCAGCAGGCAGGCCATTACCGAACCGAGCGACACGCGGGTCGCTGCCATCAGCCGCGAGAAAATATCGCGACCTAAGTGATCGGTGCCCAGCCAGTGCTGCGCATCCGGCGAAAGCAGGCGCG < 1:471467/140‑1 CCCTAATGTCAGCACCAGCAGCAGGCAGGCCATTACCGAACCGAGCGACACGCGGGTCGCTGCCATCAGCCGCGAGAAAATATCGCGACCTAAGTGATCGGTGCCCAGCCAGTGCTGCGCATCCGGCGAAAGCAGGCGCG > 2:1186267/1‑140 CCCTAATGTCAGCACCAGCAGCAGGCAGGCCATTACCGAACCGAGCGACACGCGGGTCGCTGCCATCAGCCGCGAGAAAATATCGCGACCTAAGTGATCGGTGCCCAGCCAGTGCTGCGCATCCGGCGAAAGCAGGCGCG > 2:712691/1‑140 CGAGAAAATATCGCGACCTAAGTGATCGGTGCCCAGCCAGTGCTGCGCATCCGGCGAAAGCAGGCGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAG > 2:828046/1‑140 CCTAAGTGATCGGTGCCCAGCCAGTGCTGCGCATCCGGCGAAAGCAGGCGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGC < 1:828046/140‑1 GCGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTC < 1:174651/140‑1 CGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCA > 2:1292958/1‑140 CGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCA > 2:1448720/1‑140 CGCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCA > 2:548345/1‑140 GCGCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCAC > 2:1800840/1‑140 GCCCTAATGTCAGCACCAGCAGCAGGCAGGCCATTACCGAACCGAGCGACACGCGGGTCGCTGCCATCAGCCGCGAGAAAATATCGCGACCTAAGTGATCGGTGCCCAGCCAGTGCTGCGCATCCGGCGAAAGCAGGCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3616449‑3616309 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgCTGGAGCTGGCCGCCGCTTAACTGCGGTGGGCGTTTGTCGAGAACGCTGTCATCGAGATCGACCGCCTTCAGCATTTCGCTGGCGCGCGCCAGTTGTTCGGATTTTTTCAGTGATAGCAGGTGGCGCATCGGTTCAC < NC_000913/3618249‑3618113 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |