| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,568,512 | 0 | C | A | 25.0% | 136.2 / 19.3 | 48 | R3L (CGT→CTT) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| Reads supporting (aligned to +/- strand): ref base C (4/32); new base A (12/0); total (16/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.61e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACA > NC_000913/4568374‑4568647 | aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg > 1:765627/1‑140 (MQ=255) cTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTgg < 1:1158875/140‑1 (MQ=255) aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCAt > 1:374453/1‑140 (MQ=255) aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCaa > 2:1142894/1‑139 (MQ=255) aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa < 2:194741/140‑1 (MQ=255) aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaa < 1:1142894/140‑1 (MQ=255) ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACCGGCATaacaa > 1:1201775/1‑140 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaa < 2:500825/140‑1 (MQ=255) aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATaacaaaca > 1:249297/1‑140 (MQ=255) tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGGATAACAaacaac > 1:791326/1‑140 (MQ=255) aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTc < 1:527819/140‑1 (MQ=255) aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc < 2:374453/140‑1 (MQ=255) aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGt < 2:1031143/140‑1 (MQ=255) aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGGAAAAAAAATGGGATAAAAAAAAAAACC‑tttt > 2:1280154/1‑138 (MQ=255) tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCg < 2:512319/140‑1 (MQ=255) caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑aa < 1:738471/140‑1 (MQ=255) ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AAcc > 1:136458/1‑140 (MQ=255) ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCACACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACTGGCATAAAAAAAAAAGCC‑TTTTCCGGAG‑AAcc > 1:1120963/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACg > 1:423674/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACg > 1:1240514/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCC‑CTTTCCGGGG‑AACCCCAACg > 1:716357/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAAAAAATCC‑TTGTCCGGAG‑AACCCCAACg > 2:744640/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACggg > 1:1202592/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCC‑TTGTCCGGAG‑AACCCCCACgggg > 2:781525/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACTGGCATAACAAAAAAACCC‑ATGTCCGGTG‑AAACCCAACgggg > 1:1121703/1‑140 (MQ=255) cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGa < 2:765627/140‑1 (MQ=255) aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAACAAAAAAACCC‑CTGTCCCGGG‑AACCCCCACcgggga > 2:365975/1‑138 (MQ=255) gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGaaaa > 1:510275/1‑140 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACg < 2:1202592/140‑1 (MQ=255) ggATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGa < 1:227893/140‑1 (MQ=255) ggATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAACGAGCATGAAAAAAAACACC‑CTTTCCGGGGAAACCCCAAAGGGAaaaaaa > 2:140711/1‑138 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAAAAACACC‑TTGTCCCGAG‑AACCCCCACGGGGAAAAAGaa > 2:770465/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAAAAACTCC‑TTTTCCGGAG‑AACCCCCACGGGGGAAACGaa > 1:938593/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAATCC‑CTTTCCGGGG‑GAACCCCACGGGGGAAAAGaa > 2:400115/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAATCC‑TTGTCCGGAG‑AAACCCAACGGGGGAAAAGaaa > 2:320187/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGGATAAAAAAAAACCCC‑TTTTCCGGGG‑AAACCCAAAGGGGGAAAAGaaa > 1:1187522/1‑140 (MQ=255) aGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTc < 2:249297/140‑1 (MQ=255) gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGGAAACGAAAATCa > 1:1097224/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGTCATAACAAACAACACCGTTTTCCGG‑G‑AACCCCAACTGGGGAAACGGAAATCaa > 2:445987/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATAAAAAAAAACCCC‑CTGTCCGGAG‑AACCCCAACCGGGGAAACAAAAATCaa > 2:989824/1‑140 (MQ=255) tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGGGGCATAAAAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCaaa > 1:221037/1‑139 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAACTCC‑TTGTCCGGAG‑AAACCCCACAGGGGAAAAGAAAATCAATAcc > 2:1245762/1‑140 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCGTAAAAAAAAACCCC‑TTGTCCGGGG‑GACCCCCACGGGGGAAAAAAAAATCaaaaac > 2:953270/1‑136 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCg < 1:400115/140‑1 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACACC‑TTGTCCGGAG‑GACCCCCACGGGGGAAAAGAAAATCAATAccc > 2:1089484/1‑139 (MQ=255) aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCTGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTaa < 2:722300/140‑1 (MQ=255) aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTaa < 2:1010006/140‑1 (MQ=255) cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg < 1:953270/140‑1 (MQ=255) gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCC‑TTTTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGGAATGACGaa > 1:57589/1‑140 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg < 1:920899/140‑1 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGGGGCATAACAAAAAACTCC‑TTTTCCGGAG‑AACCCCAACGGGGGAAAAGAAATTAAAAACCGTCGGTAATGACGaaaag > 2:470610/1‑138 (MQ=255) tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGAGGCATAAAAAAAAACTCC‑CTTTTCCGAG‑AACCCCCACGGGGGAAAAGAAAATCAAAAACGCCGGGAATGACGAAAAGCAgggg > 2:1283939/1‑138 (MQ=255) tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGATAAAAAAAAAATCC‑TTGTCCGGGG‑AAACCCAACGGGGAAAAAGAAAATCAAAACCCTCGGTAATGACGAAAAGCAgggg > 2:753977/1‑138 (MQ=255) cagaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga < 1:1212603/137‑1 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga < 2:713342/140‑1 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCC‑TTGTCCCGAG‑AACCCCAACGGGGGAAAAGAAAATCAAAACCGTCGGGAATGACGAAAAGCAGGGGAGAAggg > 2:320287/1‑140 (MQ=255) aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAATGGCATAACAAACAACTCC‑TTGTCCGGAG‑AAACCCAACGGGGGAAAAGAAAATCAATACCGTCGGTAAAGAAGAAAAGCAGGTGGGAAGGGCaa > 2:777531/1‑140 (MQ=255) ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga < 1:140711/140‑1 (MQ=255) cATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACgag < 2:1120963/140‑1 (MQ=255) cATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACgag < 2:136458/140‑1 (MQ=255) aTCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAAAAAATCC‑CTGTCCGGAG‑AAACCCAACGGGGGAAAAGAAAATCAATACCCTCGGGAATGACGAAAAGCAGGGGAGAAAGGGaaagccg > 2:1212603/1‑135 (MQ=255) tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc < 2:510275/140‑1 (MQ=255) aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc < 1:1089484/140‑1 (MQ=255) gCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATGCCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt < 1:320287/140‑1 (MQ=255) gTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGGAAACGAAATTCAATACCGTCGGGAATGACGAAAAGCAGGGGAGAAGGGCAACGAGACTGCAAATGTACTGa > 2:376958/1‑140 (MQ=255) aTGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg < 2:57589/140‑1 (MQ=255) aTGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg < 1:1245762/140‑1 (MQ=255) ggCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:1280154/140‑1 (MQ=255) ggCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:13973/140‑1 (MQ=255) ggCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:744640/140‑1 (MQ=255) ggTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa < 1:1199743/140‑1 (MQ=255) aaaaCGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACcaca < 2:716357/140‑1 (MQ=255) | AGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCC‑TTGTCCGGAG‑AACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAACCACA > NC_000913/4568374‑4568647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |