| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 925857 = | 39 (0.670) | 17 (0.440) | 8/184 | 2.8 | 56.8% | intergenic (+317/+27) | clpA/serW | ATP‑dependent Clp protease ATP‑binding subunit ClpA/tRNA‑Ser |
| ? | NC_000913 | = 1096994 | 0 (0.000) | intergenic (+165/+571) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser | |||||
TATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGT > NC_000913/1096862‑1097111 | tatGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcg < 2:634893‑M2/140‑8 (MQ=255) ttCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacg < 2:586775‑M2/140‑12 (MQ=255) ttCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacg < 2:500368‑M2/140‑12 (MQ=255) ttCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacg < 1:357648‑M2/140‑12 (MQ=255) ttCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacg < 1:838171‑M2/140‑12 (MQ=255) ttCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacg < 1:489133‑M2/140‑12 (MQ=255) ttCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTacttt > 2:888569‑M2/1‑129 (MQ=255) ttCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTacttt < 1:888569‑M2/134‑6 (MQ=255) tCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacga < 2:740236‑M2/140‑13 (MQ=255) tCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacga < 1:608626‑M2/140‑13 (MQ=255) cTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgag < 2:480357‑M2/140‑14 (MQ=255) gTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagct > 2:915946‑M2/1‑125 (MQ=255) gTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagct > 2:608626‑M2/1‑125 (MQ=255) tACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctc < 1:418709‑M2/140‑17 (MQ=255) tACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctc > 2:418709‑M2/1‑124 (MQ=255) tACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctc < 2:129290‑M2/140‑17 (MQ=255) tACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctc > 1:129290‑M2/1‑124 (MQ=255) tctctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttc > 1:740236‑M2/1‑121 (MQ=255) tctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctt < 1:322536‑M2/140‑22 (MQ=255) tctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctt < 2:450056‑M2/140‑22 (MQ=255) tctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctt < 1:956705‑M2/140‑22 (MQ=255) ctTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttcttt > 2:390990‑M2/1‑118 (MQ=255) ttGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttcttta < 2:41446‑M2/140‑24 (MQ=255) tGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaa < 2:602794‑M2/140‑25 (MQ=255) tGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaa < 1:252567‑M2/140‑25 (MQ=255) cgcATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagct < 1:3860‑M2/129‑16 (MQ=255) cgcATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagct > 2:3860‑M2/1‑114 (MQ=255) gcATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaata > 2:838171‑M2/1‑113 (MQ=255) tttGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggc < 1:909892‑M2/140‑32 (MQ=255) tttGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgag < 1:744099‑M2/122‑14 (MQ=255) tttGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgag > 2:744099‑M2/1‑109 (MQ=255) ttgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgaggg > 2:69408‑M2/1‑101 (MQ=255) tgACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggg > 1:41446‑M2/1‑100 (MQ=255) aCCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaa > 2:808669‑M2/1‑90 (MQ=255) aCCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaa > 2:535425‑M2/1‑90 (MQ=255) aCCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaa > 1:602794‑M2/1‑90 (MQ=255) aCCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTTAgggggggggtcgaa > 2:493563/1‑133 (MQ=255) gATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaacccccgatacg > 2:322536‑M2/1‑79 (MQ=255) gATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaacccccgatacg > 2:197383‑M2/1‑79 (MQ=255) tgCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAGTATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaacccccgatacgttgc > 2:86667‑M2/1‑75 (MQ=255) tgCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaacccccgatacgttgc > 2:252567‑M2/1‑75 (MQ=255) agacagatttcCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaacccccgatacgttgc > 1:531237‑M2/6‑75 (MQ=255) ccccTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaacccccgatacgttgccgtatacaca > 2:357648‑M2/1‑65 (MQ=255) ccccTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaacccccgatacgttgccgtatacaca > 2:805015‑M2/1‑65 (MQ=255) cAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaacccccgatacgttgccgtatacacactttccaggcgtg > 1:480357‑M2/1‑52 (MQ=255) aCGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgaggggggggttcgaaccccccctacgtttccgtatacacactttcccggggggctc < 2:601699‑M2/140‑92 (MQ=255) ggCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaacccccgatacgttgccgtatacacactttccaggcgtgctccttca > 1:367892‑M2/1‑44 (MQ=255) cGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaacccccgatacgttgccgtatacacactttccaggcgtgctccttcagc > 2:909892‑M2/1‑42 (MQ=255) cccGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaacccccgatacgttgccgtatacacactttccaggcgtgctccttcagccactcgga > 1:381988‑M2/1‑34 (MQ=255) cGGTGTGTGCAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaacccccgatacgttgccgtatacacactttccaggcgtgctccttcagccactcggaca > 1:741267‑M2/1‑32 (MQ=255) cAATATACGAAAAAAAAGCCCGTactttcgtacgagctcttctttaaatatggcggtgagggggggattcgaacccccgatacgttgccgtatacacactttccaggcgtgctccttcagccactcggacacctcaccaa > 1:220091‑M2/1‑23 (MQ=255) | TATGTTCTGTACTCTCTTGCGCATTTTGATTGTTGACTGAGTAACCAGACAGTTGATGTGCACGATTTCCCCTCGCCCTAACAGACGTGGGCGGGGGCACCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGT > NC_000913/1096862‑1097111 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |