New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1192544 =	45 (0.550)	4 (0.050)	3/268	7.7	7.9%	coding (88/642 nt)	hflD	lysogenization regulator
	?	NC_000913	1192602 =	49 (0.620)					coding (30/642 nt)	hflD	lysogenization regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCTGCCGCTGCCGGTCTGATTATTATCTTTACTTAAAACAAGGAAGCAGTGAACGTGGCAAAGAATTACTATGACATCACCCTCGCCCTGGCCGGTATTTGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1192685‑1192544 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCACACTTCACCGTTATAGAAGACGGC  >  NC_000913/1192602‑1192738                                                                                                                                                                                                                                                                                         TCTGCCGCTGCCGGTCTGATTATTATCTTTACTTAAAACAAGGAAGCAGTGAACGTGGCAAAGAATTACTATGACATCACCCTCGCCCTGGCCGGTATTTGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGG                                                                                                                                             >  2:173040/1‑140                                                                                         TGGCCGGTATTTGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACG                                                     >  2:1097603/1‑140                                                                                         TGGCCGGTATTTGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGCATTGTTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACG                                                     >  1:68999/1‑140                                                                                            CCGGTATTTGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTG                                                  <  1:1097603/140‑1                                                                                                                   CTGGTGCAACAACTCGCTCACCAGGGGCATTGTTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGC                           <  2:68999/140‑1                                                                                                                                            GGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCACACTTCACCGTTATAGAAGACGGC  >  1:761800/1‑140                                                                                                                                            GGCGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCACACTTCACCGTTATAGAAGACGGC  >  2:175998/1‑140                                                                                                                                                                                                                                                                                         TCTGCCGCTGCCGGTCTGATTATTATCTTTACTTAAAACAAGGAAGCAGTGAACGTGGCAAAGAATTACTATGACATCACCCTCGCCCTGGCCGGTATTTGTCAGTCGGCACGCCTGGTGCAACAACTCGCTCACCAGGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1192685‑1192544 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcGAGGGTGATGTCATAGTAATTCTTTGCCACGTTCACTGCTTCCTTGTTTTAAGTAAAGATAATAATCAGACCGGCAGCGGCAGACGCTGCTCAATAATACCGCCACCGAGGCACACTTCACCGTTATAGAAGACGGC  >  NC_000913/1192602‑1192738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.