BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	142 (2.030)	127 (1.830)	68/274	0.0	64.1%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
*	?	NC_000913	3766087 =	1 (0.010)	127 (1.830)	68/274	0.0	64.1%	coding (3905/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 273 total aligned reads displayed.

CCAATGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362862‑3363140

ccAATGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCa                                                                                                                                             >  1:1017047/1‑140 (MQ=255)

          cctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCg                                                                                                                                   <  1:1161730‑M1/11‑1 (MQ=255)

            tgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGaa                                                                                                                                 <  1:771496‑M1/13‑1 (MQ=255)

             tataGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaa                                                                                                                                >  1:323740/1‑140 (MQ=255)

              ataGAGATTGCCGCTGTTGATTTTGATCGTGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaa                                                                                                                               >  1:150666/1‑140 (MQ=255)

                 gagaTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaaaaa                                                                                                                            <  2:475619/140‑1 (MQ=255)

                  agaTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaaaaaa                                                                                                                           <  2:323740/140‑1 (MQ=255)

                   gaTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAg                                                                                                                          >  1:56125/1‑140 (MQ=255)

                    aTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAgg                                                                                                                         <  1:908653/140‑1 (MQ=255)

                     ttGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGc                                                                                                                        >  2:428034/1‑140 (MQ=255)

                       gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCaa                                                                                                                      >  1:60853/1‑140 (MQ=255)

                       gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCaa                                                                                                                      >  1:819750/1‑140 (MQ=255)

                         atctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACa                                                                                                                    <  1:519030‑M1/26‑1 (MQ=255)

                             gtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGc                                                                                                                <  1:657742‑M1/30‑1 (MQ=255)

                              tcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCt                                                                                                               <  1:731915‑M1/31‑1 (MQ=255)

                                   ttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTAcgcg                                                                                                          <  1:780187‑M1/36‑1 (MQ=255)

                                     ttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCt                                                                                                        <  2:196711‑M1/38‑1 (MQ=255)

                                           ggAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTtgatg                                                                                                  >  2:725657/1‑140 (MQ=255)

                                                   cagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGc                                                                                          >  2:39852‑M1/89‑140 (MQ=255)

                                                    agaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATgg                                                                                           <  2:212043‑M1/51‑1 (MQ=255)

                                                      aaTCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGAc                                                                                       >  1:795359/1‑140 (MQ=255)

                                                        tCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTTAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  1:886004/140‑1 (MQ=255)

                                                        tCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  2:150666/140‑1 (MQ=255)

                                                        tCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  1:192519/140‑1 (MQ=255)

                                                           gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  <  2:111850‑M1/60‑1 (MQ=255)

                                                           gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  <  2:1145047‑M1/60‑1 (MQ=255)

                                                           gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  <  2:971508‑M1/60‑1 (MQ=255)

                                                             catttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTc                                                                                <  1:385716‑M1/62‑1 (MQ=255)

                                                                   aGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATc                                                                          >  2:1039245/1‑140 (MQ=255)

                                                                    gATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCa                                                                         >  2:744548/1‑140 (MQ=255)

                                                                      tgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       >  2:1098057‑M1/70‑140 (MQ=255)

                                                                      tCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       <  2:60853/140‑1 (MQ=255)

                                                                         tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    >  2:54322/1‑140 (MQ=255)

                                                                         tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    <  1:725657/140‑1 (MQ=255)

                                                                         tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    >  1:235157/1‑140 (MQ=255)

                                                                          aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  1:243185/1‑140 (MQ=255)

                                                                          aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  1:475857/1‑140 (MQ=255)

                                                                            tatatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTc                                                                 <  2:847437/140‑1 (MQ=255)

                                                                             gacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCt                                                                <  2:77062‑M1/78‑1 (MQ=255)

                                                                                tCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGAGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGca                                                             >  2:1005662/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGa                                                                            >  1:397779/1‑124 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:112974/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:592717/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:932298/1‑140 (MQ=255)

                                                                                  gatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaac                                                           <  2:379073‑M1/83‑1 (MQ=255)

                                                                                  gCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACACTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaac                                                           >  2:684960/1‑140 (MQ=255)

                                                                                   cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaaca                                                          >  1:84000/1‑140 (MQ=255)

                                                                                   cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaaca                                                          >  1:950166/1‑140 (MQ=255)

                                                                                   cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaaca                                                          >  1:87308/1‑140 (MQ=255)

                                                                                             cctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                <  1:217341‑M1/94‑1 (MQ=255)

                                                                                             cccGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                >  2:650271/1‑140 (MQ=255)

                                                                                                gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:449838‑M1/97‑1 (MQ=255)

                                                                                                 ttCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaaa                                            >  1:154160/1‑140 (MQ=255)

                                                                                                  tCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           >  2:80706/1‑140 (MQ=255)

                                                                                                  tCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           >  2:223289/1‑140 (MQ=255)

                                                                                                  gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  1:291420‑M1/99‑1 (MQ=255)

                                                                                                  gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  2:872278‑M1/99‑1 (MQ=255)

                                                                                                  gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  2:898003‑M1/99‑1 (MQ=255)

                                                                                                  gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  2:561453‑M1/99‑1 (MQ=255)

                                                                                                  gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  1:804624‑M1/99‑1 (MQ=255)

                                                                                                  gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  2:517534‑M1/99‑1 (MQ=255)

                                                                                                     tgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTcc                                        >  2:105679‑M1/39‑140 (MQ=255)

                                                                                                      gcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCt                                       <  1:1041487‑M1/103‑1 (MQ=255)

                                                                                                       caacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCtt                                      <  1:680289‑M1/104‑1 (MQ=255)

                                                                                                          ttttttGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTg                                   >  1:1076134/1‑140 (MQ=255)

                                                                                                             ttccacgagaagctatcattgttatatctaAGTAGATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                <  2:1073563‑M1/110‑1 (MQ=255)

                                                                                                                  cgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaaaa                           <  2:810368‑M1/115‑1 (MQ=255)

                                                                                                                    ggTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaaaaaa                         <  2:482285/140‑1 (MQ=255)

                                                                                                                             tCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:54322/140‑1 (MQ=255)

                                                                                                                             tCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:112974/140‑1 (MQ=255)

                                                                                                                             tCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:1103026/140‑1 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTTATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:682390‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:664645‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:625504‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:1161730‑M1/15‑140 (MQ=255)

                                                                                                                              attgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTAc               >  2:645089‑M1/14‑140 (MQ=255)

                                                                                                                               ttgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              <  2:366737‑M1/128‑1 (MQ=255)

                                                                                                                               aCTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:126648/1‑138 (MQ=255)

                                                                                                                               aCTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:126648/138‑1 (MQ=255)

                                                                                                                               aCTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  2:757927/1‑140 (MQ=255)

                                                                                                                               aCTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              <  2:795359/140‑1 (MQ=255)

                                                                                                                                tgttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             <  2:1112825‑M1/129‑1 (MQ=255)

                                                                                                                                cTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             <  1:644891/140‑1 (MQ=255)

                                                                                                                                  ttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  1:700857‑M1/10‑140 (MQ=255)

                                                                                                                                  ttatatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  2:519030‑M1/10‑140 (MQ=255)

                                                                                                                                  gATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  2:301160/140‑1 (MQ=255)

                                                                                                                                   aTAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  2:136738/132‑1 (MQ=255)

                                                                                                                                    tAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  1:967511/1‑138 (MQ=255)

                                                                                                                                     tatctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtata        <  1:274672‑M1/134‑1 (MQ=255)

                                                                                                                                      gTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatat       <  2:950166/140‑1 (MQ=255)

                                                                                                                                      atctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:497703‑M1/124‑1 (MQ=255)

                                                                                                                                      atctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  2:497703‑M1/6‑129 (MQ=255)

                                                                                                                                       tctaAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  2:274672‑M1/5‑140 (MQ=255)

                                                                                                                                       tATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  1:178911/140‑1 (MQ=255)

                                                                                                                                       tATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  1:207170/140‑1 (MQ=255)

                                                                                                                                       tATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  1:757927/140‑1 (MQ=255)

                                                                                                                                          aAGTAAATGGCGAAAAAAAAGGCGACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatat       >  2:285201‑M1/2‑136 (MQ=255)

                                                                                                                                          aAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:163546‑M1/2‑127 (MQ=255)

                                                                                                                                          aAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  1:425925‑M1/139‑1 (MQ=255)

                                                                                                                                           AGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  1:734238‑M1/140‑1 (MQ=255)

CCAATGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362862‑3363140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.