| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,568,504 | 0 | T | G | 36.5% | 121.9 / 16.9 | 85 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| Reads supporting (aligned to +/- strand): ref base T (15/39); new base G (31/0); total (46/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.51e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAT > NC_000913/4568370‑4568639 | ggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaa > 1:94982/1‑140 (MQ=255) gCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaa > 2:857561/1‑140 (MQ=255) ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa < 1:755500/140‑1 (MQ=255) ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa < 2:281510/140‑1 (MQ=255) ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa < 1:394623/140‑1 (MQ=255) aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg > 1:1088831/1‑140 (MQ=255) aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaaaagag > 1:1058422/1‑136 (MQ=255) cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATa < 1:383860/140‑1 (MQ=255) cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACG‑TGGCATa > 1:67513/1‑140 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATaacaaa < 2:1088831/140‑1 (MQ=255) cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATaacaaac < 2:715160/140‑1 (MQ=255) tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAaacaac < 2:111109/140‑1 (MQ=255) tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑TGGCATAacaaacaaa > 2:554435/1‑139 (MQ=255) aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑TGGCATAACAAACAACACCTTG‑t > 2:613109/1‑140 (MQ=255) cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑TGGCATAACAAAAAAATCCCTG‑Tc > 2:515330/1‑140 (MQ=255) tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCg < 1:87015/140‑1 (MQ=255) aCCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCgg < 2:100476/140‑1 (MQ=255) cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGgag > 1:837549/1‑140 (MQ=255) aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAA‑AGGCATAAAAAAAAACACCCTT‑GCCGGGG‑A‑Accccc > 2:151382/1‑139 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑TGGGATAACAAACAACTCCTTT‑TCCGGAG‑A‑ACCCCAAAggg > 1:433973/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAAAAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACgggg > 1:640542/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACgggg > 1:874008/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑TGGGACAACAAACAACTCCCTT‑TTCGGGG‑A‑ACCCCACCgggg > 2:745306/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑AGGCATAACAAAAAAATCCTTT‑TCCGGGG‑A‑ACCCCCACgggg > 2:353140/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGAAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAA‑TGGCATAACAAAAAAATCCCTG‑TCCGGGG‑A‑ACCCCCACgggg > 2:217374/1‑140 (MQ=255) cAGGCTGGATCAGATCCGTCGACAGATACGAAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGa < 1:217374/140‑1 (MQ=255) cTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACG‑TGGGATAAAAAACAACTCCCTG‑TCCGGAG‑A‑AACCCCACGGGGgaaaa > 1:499324/1‑139 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACg < 1:29271/140‑1 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCTGGAAAAAC‑AACAAACCCCTG‑TTCCGAG‑A‑AACCCCACCGGGAAAACGaa > 1:1163104/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑TGGGATAACAAACAAACCCCTG‑TCCGGGG‑A‑ACCCCCACGGGGGAAAAGaa > 2:678068/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGaaa > 1:834613/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑GGGGATAAAAAAAAAACCCCTT‑TCCGGGGAA‑ACCCCAAGGGGGaaaagaaa > 1:1179110/1‑136 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAA‑TGGCATAACAAACAACACCTTG‑TCCGGAG‑A‑ACCCCAACGGGGGAAAAGaaa > 2:234314/1‑140 (MQ=255) acccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑CGGCATAACAAAAAAATCCTTG‑TTCGGAG‑A‑ACCCCAACGGGGGAAACGaaaataaa > 1:1078389/3‑135 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAG‑TGGCATAAAAAACAACCCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGGAAAAGAAAATCaa > 2:922809/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACG‑GGGCATAAAAAAAAAATCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAAAGAAATTCaa > 1:331388/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑TGGCATAACAAACAACTCCTTT‑TCCGGAG‑A‑ACCCCCACGGGGAAAACGAAATTCaa > 1:980552/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAA‑GGGGATAAAAAAAAAAACCCTGTTCCGGGA‑A‑ACCCCACCGGGGAAAA‑GAAAATCaa > 2:283597/1‑140 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAC‑TGGCATAACAAAAAAATCCTTG‑TCCGGAG‑G‑AACCCAACGGGGGAAACGAAAATCAAAAcc > 2:96033/1‑140 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAACA‑TGGGAGAACAAAAAACCCCTTG‑TCCGGGG‑A‑ACCCCCACGGGGAAAAAGAAATTTAAAAcc > 2:465466/1‑140 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAG‑TGGCATAACAAAAAACTCCTTG‑TCCGGAG‑A‑AACCCAACGGGGAAAACGAAATTCAATAACg > 1:713749/1‑140 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑TGGCATAACAAAAAACTCCCTG‑TCCGGAG‑G‑ACCCCAACGGGGGAAAAGAAATTCAATACCg > 1:601689/1‑140 (MQ=255) cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGt < 2:94982/140‑1 (MQ=255) aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑TGGCATAACAAAAAAATCCTTT‑TCCGGGG‑A‑ACCCCCACGGGGGAAACGAAAATCAAAAcccgcggg > 2:716012/1‑134 (MQ=255) gATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTa < 2:837549/140‑1 (MQ=255) aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑TGGCATAAAAAAAAAACCCTTG‑TCCGGAG‑G‑ACCCCCACGGGGGAAAAGAAAATCAAAAACGTCGGTaa > 2:977585/1‑140 (MQ=255) cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg < 1:922809/140‑1 (MQ=255) gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa < 2:701950/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa < 1:234314/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa < 1:977585/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa < 2:706930/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAA‑TGGCATAAAAAACAACTCCTTG‑TCCGGAG‑G‑AACCCAACGGGGGAAAAGAAAATCAATACCGGCGGTAATGAAGaaa > 2:1152461/1‑140 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg < 1:353140/140‑1 (MQ=255) tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg < 1:51435/140‑1 (MQ=255) tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACA‑GGGCATAAAAAAAAAACCCTTT‑TCCGGAG‑A‑ACCCCAAAGGGGAAAAAGAAAATTAATACCCTCGGTAATGACGAAAAGCAgggg > 2:517244/1‑138 (MQ=255) tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑TGGCATAAAAAAAAACTCCTTG‑TCCGGGG‑A‑AACCCAACGGGGGAAAAGAAAATCAATACCCTCGGGAATGACGAAAAGCAgggg > 2:51435/1‑138 (MQ=255) aCAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga < 1:515330/140‑1 (MQ=255) cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag < 2:834613/140‑1 (MQ=255) cAAAATCAACGCCATCGGGAAAAACAGCGTGGCAGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGGAATGACGAAAAGCAGGGgag > 2:353012/1‑140 (MQ=255) aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑GGGCATAACAAAAAACCCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAAATCAATAACCACGGGAATGACGAAAAGCAGGTGAGAAg > 2:815749/1‑140 (MQ=255) aTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAG‑TGGCGTAAAAAACAACTCCTTG‑TTCGGAG‑G‑ACCCCAACGGGGGAAAAGAAATTCAATATCGTCGGGAATGAAGAAAAGCAAGTGAGAAgg > 2:150567/1‑140 (MQ=255) aTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑TGGCATAAAAAAAAACTCCTTG‑TCCGGGG‑A‑ACCCCAACGGGGGAAACGAAAATCAATAACGTCGGGAATGACGAAAAGCAGGGGAGaaag > 2:1061867/1‑138 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACG‑TGGCATAACAAAAAACTCCTTG‑TTCGGAG‑A‑ACCCCCACGGGGGAAACGAAAATCAATACCGTCGGGAATGAAGAAAAGCAGGGGAGAAggg > 2:1141511/1‑140 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAG‑TGGCATAAAAAAAAACCCCTTG‑TCCGGAG‑A‑ACCCCCACAGGGGAAAAGAAAATCAATACCGTCGGTAATGACGAAAGGGAGGGGAGAAagg > 2:37471/1‑140 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAC‑TGGCATAAAAAAAAACCCCTTG‑TCCGGAG‑A‑AACCCCACGGGGGAAACGAAAATCAAAACCGTCGGGAATGACGAAAAGCAGGGGAGAAggg > 2:1008374/1‑140 (MQ=255) aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACG‑AGGGATAACAAAAAACTCCTTT‑TCCGGAG‑A‑AACCCAACGGGGGAAAAGAAATTCAATACCGTCGGGAATGACGAAAAGGAGGGGGGAAAGGGaa > 2:240600/1‑140 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTGAAAAAAAA‑GGGCATAACAAAAAACTCCTTG‑TCCGGGG‑AGACCCCACCGGGGAAAA‑GAAATTCAATAACGGCGGGAATAACGAAAAGCAGGGGGGAAAGGCAAc > 2:254787/1‑140 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc < 1:716012/140‑1 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc < 1:1008374/140‑1 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc < 1:1051404/140‑1 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc < 1:517244/140‑1 (MQ=255) ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga < 1:11641/140‑1 (MQ=255) ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga < 1:791540/140‑1 (MQ=255) cGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga > 1:426871/1‑126 (MQ=255) cGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga < 2:426871/126‑1 (MQ=255) aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa < 1:439791/140‑1 (MQ=255) gTGGCGGCATGGCGGGGAAAAAAAAG‑CGGGATAAAAAACAACTCCTTG‑TCCGGGG‑A‑ACCCCCACGGGGGAAAAGAAAATCAATAACGTCGGGAATGACGAAAAGCAGGTGAGAAGGGGAACGAGACTGCAAATGTACTGa > 2:1013534/1‑140 (MQ=255) tGGCGGCATGGCGGGTAAAAAAAAG‑CGGGAAAACAAAAAACCCCTTG‑TCCGGGG‑A‑ACCCCAACGGGGAAAAAGAAAATCAAAACCGTCGGGAATGACGAAAAGCAGGGGGGAAGGGCAACGAGAATGCAAAAGTACTGaa > 2:689910/1‑140 (MQ=255) ggcagcATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAAt < 1:353012/140‑1 (MQ=255) ggcATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTc < 1:150567/140‑1 (MQ=255) gcATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa < 2:275686/140‑1 (MQ=255) gcATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa < 1:613109/140‑1 (MQ=255) aTGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg < 1:37471/140‑1 (MQ=255) ggCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:283597/140‑1 (MQ=255) ggCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 2:713749/140‑1 (MQ=255) ggCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:554435/140‑1 (MQ=255) cGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt < 1:678068/140‑1 (MQ=255) cGGGTAAAAAAAAG‑GGGCCTAACAAAAAAATCCTTG‑TCCGGAG‑A‑AACCCAAAGGGGAAAACGAAAATCAATACCGTCGGGAAAGGCGAAAAGCAGGGGGGAAGGGGAAAGGGACTGCAAATGTACTGAAATTTATGTaaa > 2:79364/1‑139 (MQ=255) cGGGGAAAAAAAAG‑TGGCATAAAAAAAAAATCCTTG‑TCCGGGG‑A‑ACCCCCACGGGGGAAAAGAAATTCAATACCGTCGGGAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt > 2:304133/1‑140 (MQ=255) | GGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACG‑TGGCATAACAAACAACTCCTTG‑TCCGGAG‑A‑ACCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAT > NC_000913/4568370‑4568639 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |