| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 469,207 | Δ1 bp | coding (337/1773 nt) | mdlA → | ABC transporter family protein MdlA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 469,207 | 0 | A | . | 90.0% | 59.7 / 4.4 | 20 | coding (337/1773 nt) | mdlA | ABC transporter family protein MdlA |
| Reads supporting (aligned to +/- strand): ref base A (2/0); new base . (8/10); total (10/10) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.74e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.80e-01 | |||||||||||
GTTGTGGTTTATCTCCTGCGTTACGTCTGGCGGGTATTGCTGTTTGGTGCGTCTTATCAACTGGCTGTTGAACTGCGTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGCACCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTGCCGCCGGAGAAGGGGTGCTGACGCTGGTGGATTCACTGGTGATGGGCTGCGCTGTGTTGATTATGATGTCTACGCAAAT > NC_000913/469072‑469337 | gTTGTGGTTTATCTCCTGCGTTACGTCTGGCGGGTATTGCTGTTTGGTGCGTCTTATCAACTGGCTGTTGAACTGCGTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGt < 1:330412/140‑1 (MQ=255) gtgGTTTATCTCCTGCGTTACGTCTGGCGGGTATTGCTGTTTGGTGCGTCTTATCAACTGGCTGTTGAACTGCGTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGAc < 1:209425/140‑1 (MQ=255) tgGTTTATCTCCTGCGTTACGTCTGGCGGGTATTGCTGTTTGGTGCGTCTTATCAACTGGCTGTTGAACTGCGTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGt < 2:96096/136‑1 (MQ=255) tgGTTTATCTCCTGCGTTACGTCTGGCGGGTATTGCTGTTTGGTGCGTCTTATCAACTGGCTGTTGAACTGCGTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGt > 1:96096/1‑136 (MQ=255) gCGTTACGTCTGGCGGGTATTGCTGTTTGGTGCGTCTTATCAACTGGCTGTTGAACTGCGTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGACCTCATGGCTCGTGc > 2:154985/1‑140 (MQ=255) tGCGTCTTATCAACTGGCTGTTGAACTGCGTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTgc < 1:283154/140‑1 (MQ=255) tGCGTCTTATCAACTGGCTGTTGAACTGCGTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTgc < 1:253330/140‑1 (MQ=255) tGCGTCTTATCAACTGGCTGTTGAACTGCGTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTgc > 2:253330/1‑140 (MQ=255) tGCGTCTTATCAACTGGCTGTTGAACTGCGTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTgc > 2:283154/1‑140 (MQ=255) cGTCTTATCAACTGGCTGTTGAACTGCGTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTgccg > 2:172749/1‑140 (MQ=255) cGTCTTATCAACTGGCTGTTGAACTGCGTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTgccg > 2:309176/1‑140 (MQ=255) gCTGTTGAACTGCGTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTGCCGCCGGAGAAgggggg > 1:257418/1‑138 (MQ=255) gTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTGCCGCCGGAGAAGGGGTGCTGACGCtggtgg > 2:51417/1‑140 (MQ=255) ccGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTGCCGCCGGAGAAGGGGTGCTGACGCTGGTGGATTCACTGGTGAt < 1:309176/140‑1 (MQ=255) ccGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTGCCGCCGGAGAAGGGGTGCTGACGCTGGTGGATTCACTGGTGAt < 1:172749/140‑1 (MQ=255) tCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTGCCGCCGGAGAAGGGGTGCTGACGCTGGTGGATTCACTGGTGATggg < 2:145385/140‑1 (MQ=255) aaGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTGCCGCCGGAGAAGGGGTGCTGACGCTGGTGGATTCACTGGTGATGGGCTgcgc < 1:51417/140‑1 (MQ=255) tCCTGAGTTTTACCTGCGTCATCGC‑CCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTGCCGCCGGAGAAGGGGTGCTGACGCTGGTGGATTCACTGGTGATGGGCTGCGCTGTGTTGATTat < 2:231358/140‑1 (MQ=255) aGTTTTACCTGCGTCATCGCACCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTGCCGCCGGAGAAGGGGTGCTGACGCTGGTGGATTCACTGGTGATGGGCTGCGCTGTGTTGATTatgatg > 2:156979/1‑140 (MQ=255) cGTCATCGCACCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTGCCGCCGGAGAAGGGGGGCTGACGCTGGTGGATTCACTGGTGATGGGCTGCGCTGTGTTGATTATGATGTCTACGCAAAt > 1:71674/1‑140 (MQ=255) | GTTGTGGTTTATCTCCTGCGTTACGTCTGGCGGGTATTGCTGTTTGGTGCGTCTTATCAACTGGCTGTTGAACTGCGTGAAGATTATTACCGTCAGCTAAGCCGGCAGCATCCTGAGTTTTACCTGCGTCATCGCACCGGTGACCTCATGGCTCGTGCGACCAATGACGTCGATCGCGTCGTGTTTGCCGCCGGAGAAGGGGTGCTGACGCTGGTGGATTCACTGGTGATGGGCTGCGCTGTGTTGATTATGATGTCTACGCAAAT > NC_000913/469072‑469337 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |