New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 1097113 | NA (NA) | 18 (0.380) | 16/268 | 1.5 | 100% | intergenic (+284/+452) | ycdU/serX | uncharacterized protein YcdU/tRNA‑Ser |
? | NC_000913 | 1097583 = | 0 (0.000) | noncoding (70/88 nt) | serX | tRNA‑Ser |
ACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAG > NC_000913/1097446‑1097710 | tacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgagggggggattgactcgcttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCg < 2:420463‑M2/3‑1 (MQ=255) tacgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgagggggggattgactcgcttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCg < 1:380638‑M2/3‑1 (MQ=255) acgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgagggggggattgactcgcttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGa < 2:562477‑M2/4‑1 (MQ=255) acgaaaaaaaagcccgtactttcgtacgagctcttctttaaatatggcggtgagggggggattgactcgcttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGa < 1:194838‑M2/4‑1 (MQ=255) aaatatggcggtgagggggggattgactcgcttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTg < 1:292002‑M2/43‑1 (MQ=255) cggtgagggggggattgactcgcttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCa < 1:48131‑M2/51‑1 (MQ=255) gtgagggggggattgactcgcttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGc < 1:97099‑M2/53‑1 (MQ=255) gtgagggggggattgactcgcttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGc < 2:77053‑M2/53‑1 (MQ=255) ggggggattgactcgcttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTc < 1:283287‑M2/58‑1 (MQ=255) tgactcgcttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCt > 1:35868‑M2/75‑140 (MQ=255) cttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGa > 1:188126‑M2/68‑128 (MQ=255) cttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGa < 2:188126‑M2/61‑1 (MQ=255) cttcgctcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCaaa > 1:578566‑M2/68‑140 (MQ=255) tcgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCg < 1:673939‑M2/79‑1 (MQ=255) cgccctgcgggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGt > 2:233177‑M2/61‑140 (MQ=255) gggcagcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCt < 2:35868‑M2/88‑1 (MQ=255) gcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTc < 2:267874‑M2/82‑1 (MQ=255) gcccgctcactgcgttcacggtctgtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTc > 1:267874‑M2/48‑129 (MQ=255) gtccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAAt > 2:176501‑M2/24‑140 (MQ=255) tccaactggctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATc > 2:95539‑M2/23‑140 (MQ=255) gctgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTg > 1:820727‑M2/15‑140 (MQ=255) tgtcgccagttgTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAg > 1:100309‑M2/13‑140 (MQ=255) | ACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAACCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTCGTTCCTGTCTTGCTGGAACGGGCGCTAATTTAGGGAAATCATGACCTGAG > NC_000913/1097446‑1097710 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |