New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2541736 =	35 (0.910)	4 (0.110)	3/258	3.9	10.6%	coding (777/834 nt)	cysU	sulfate/thiosulfate ABC transporter inner membrane subunit CysU
	?	NC_000913	= 2541732	35 (0.970)					coding (781/834 nt)	cysU	sulfate/thiosulfate ABC transporter inner membrane subunit CysU
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGATGCCAATCAGAAACCATTTGCCCCAGTTAATCGGGCGCGCGTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCACGCGATATTTCCGGCGATAAAAATCACC  >  NC_000913/2541604‑2541871                                                                                                                                 |                                                                                                                                            cGATGCCAATCAGAAACCATTTGCCCCAGTTAATCGGGCGCGCGTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAAcagcagcagag                                                                                                                                  >  1:294573/1‑138 (MQ=255) cGATGCCAATCAGAAACCATTTGCCCCAGTTAATCGGGCGCGCGTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAAcagcagcagag                                                                                                                                  >  2:29016/1‑138 (MQ=255)        aaTCAGAAACCATTTGCCCCAGTTAATCGGGCGCGCGTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGc                                                                                                                           >  2:393900/1‑140 (MQ=255)         aTCAGAAACCATTTGCCCCAGTTAATCGGGCGCGCGTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAAcagcagcagca                                                                                                                                  <  2:492122/132‑1 (MQ=255)         aTCAGAAACCATTTGCCCCAGTTAATCGGGCGCGCGTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAAcagcagcagca                                                                                                                                  >  1:492122/1‑132 (MQ=255)          tCAGAAACCATTTGCCCCAGTTAATCGGGCGCGCGTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCcg                                                                                                                         <  2:461042/140‑1 (MQ=255)            aGAAACCATTTGCCCCAGTTAATCGGGCGCGCGTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCcgcg                                                                                                                       <  2:329217/140‑1 (MQ=255)            aGAAACCATTTGCCCCAGTTAATCGGGCGCGCGTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCcgcg                                                                                                                       <  2:278149/140‑1 (MQ=255)            aGAAACCATTTGCCCCAGTTAATCGGGCGCGCGTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCcgcg                                                                                                                       <  1:575729/140‑1 (MQ=255)              aaaCCATTTGCCCCAGTTAATCGGGCGCGCGTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAg                                                                                                                     <  1:393900/140‑1 (MQ=255)                    tttGCCCCAGTTAATCGGGCGCGCGTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCAc                                                                                                               >  2:630522/1‑140 (MQ=255)                            aGTTAATCGGGCGCGCGTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCaa                                                                                                       >  1:216547/1‑140 (MQ=255)                                       cgcgcgTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAA‑‑‑CAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGcc                                                                                         <  2:294573/140‑1 (MQ=255)                                        tcgcgTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTg                                                                                           <  2:42987/139‑1 (MQ=255)                                                    gCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCaa                                                                               <  1:22598/140‑1 (MQ=255)                                                      ttCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAAc                                                                             >  2:279592/1‑140 (MQ=255)                                                        cAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTc                                                                           >  2:584982/1‑140 (MQ=255)                                                        cAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTc                                                                           >  2:328181/1‑140 (MQ=255)                                                               gTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAg                                                                    <  1:279592/140‑1 (MQ=255)                                                                tAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAgc                                                                   >  2:213178/1‑140 (MQ=255)                                                                        gCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACaaaa                                                           >  1:102350/1‑140 (MQ=255)                                                                             tAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAatcat                                                      <  2:102350/140‑1 (MQ=255)                                                                                     tACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAA‑‑‑CAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCa                                           <  1:29016/140‑1 (MQ=255)                                                                                        cacaCGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCa                                           <  1:630522/140‑1 (MQ=255)                                                                                            cGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTc                                       >  2:446639/1‑140 (MQ=255)                                                                                             gCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTcc                                      >  2:549562/1‑140 (MQ=255)                                                                                                 aCCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCt                                  >  1:490718/1‑140 (MQ=255)                                                                                                     aaGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCa                              <  1:584982/140‑1 (MQ=255)                                                                                                             ttGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCACGCGatat                      >  2:607571/1‑140 (MQ=255)                                                                                                                 agagTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCGGCGACGTCACTTCCGTCTTCCACGCGATATTTcc                  <  2:216547/140‑1 (MQ=255)                                                                                                                   agTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCACGCGATATTTCCgg                <  1:328181/140‑1 (MQ=255)                                                                                                                    gtgtTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCACGCGATATTTCCGGc               >  1:310910/1‑140 (MQ=255)                                                                                                                     tgtTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCACGCGATATTTCCGGCg              <  2:490718/140‑1 (MQ=255)                                                                                                                     tgtTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCACGCGATATTTCCGGCg              <  1:549562/140‑1 (MQ=255)                                                                                                                          aTTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCACGCGATATTTCCgg                >  1:464229/1‑133 (MQ=255)                                                                                                                          aTTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCACGCGATATTTCCgg                <  2:464229/133‑1 (MQ=255)                                                                                                                               gaACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCACGCGATATTTCCGGCGATAAAAATCa    >  2:224664/1‑140 (MQ=255)                                                                                                                               gaACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCACGCGATATTTCCGGCGATAAAAATCa    >  2:510390/1‑140 (MQ=255)                                                                                                                                 aCAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCACGCGATATTTCCGGCGATAAAAATCAcc  >  1:53209/1‑140 (MQ=255)                                                                                                                                 |                                                                                                                                            CGATGCCAATCAGAAACCATTTGCCCCAGTTAATCGGGCGCGCGTCATAACGCTTCAATTGGGTAACTTCCGCCATTAATGACCTACCACACGCCGACCAAAGCGACTTTGCAGAGTGTTAATTGAGAACAGCAGCAGCAGAGATGCCGCGAGGATCACCGAAGCAATCGCGCTCGCTGCCGGGTAATCAAACTCCTGTAAGCGCACAAAAATCATCAGCGACGTCACTTCCGTCTTCCACGCGATATTTCCGGCGATAAAAATCACC  >  NC_000913/2541604‑2541871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.