| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 161693 = | 45 (0.700) | 3 (0.050) | 3/252 | 5.7 | 6.1% | coding (339/531 nt) | thpR | RNA 2',3'‑cyclic phosphodiesterase |
| ? | NC_000913 | 163801 = | 51 (0.870) | coding (1697/2430 nt) | hrpB | putative ATP‑dependent RNA helicase HrpB | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACGGATTCGTCAACCTGGTTTCACACTCACGCTTGATGACGCCGGACAATGGCTGCGTTCGCGTGTGGTGTGGTTAGGGATGCGTCAGCCGCCACGCGGCTTAATCCAGCTGGCGAATATGCTCCGTTCACAGGCTGCCCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/161837‑161693‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcccgcagcTGGTACAGCAGTCTGACACTGTGGAGTGGGATGACGCGCAAGGTACGCTGAAAGCCTGGCGTCGGCTACAAATCGGTCAGTTGACGGTGAAAGTGCAGCCGCTGGCGAAACCGTCAGAAGACGAGTTGCATCAGGCGAT > NC_000913/163801‑163939 ACGGATTCGTCAACCTGGTTTCACACTCACGCTTGATGACGCCGGACAATGGCTGCGTTCGCGTGTGGTGTGGTTAGGGATGCGTCAGCCGCCACGCGGCTTAATCCAGCTGGCGAATATGCTCCGTTCACAGGCTGCCC > 2:1024114/1‑140ACGGATTCGTCAACCTGGTTTCACACTCACGCTTGATGACGCCGGACAATGGCTGCGTTCGCGTGTGGTGTGGTTAGGGATGCGTCAGCCGCCACGCGGCTTAATCCAGCTGGCGAATATGCTCCGTTCACAGGCTGCCC > 1:1041434/1‑140 GGTTTCACACTCACGCTTGATGACGCCGGACAATGGCTGCGTTCGCGTGTGGTGTGGTTAGGGATGCGTCAGCCGCCACGCGGCTTAATCCAGCTGGCGAATATGCTCCGTTCACAGGCTGCC < 1:772931/123‑1 GGTTTCACACTCACGCTTGATGACGCCGGACAATGGCTGCGTTCGCGTGTGGTGTGGTTAGGGATGCGTCAGCCGCCACGCGGCTTAATCCAGCTGGCGAATATGCTCCGTTCACAGGCTGCC > 2:772931/1‑123 CTCACGCTTGATGACGCCGGACAATGGCTGCGTTCGCGTGTGGTGTGGTTAGGGATGCGTCAGCCGCCACGCGGCTTAATCCAGCTGGCGAATATGCTCCGTTCACAGGCTGCCCGCAGCTGGTACAGCAGTCTGACACT > 1:776995/1‑140 GCCGGACAATGGCTGCGTTCGCGTGTGGTGTGGTTAGGGATGCGTCAGCCGCCACGCGGCTTAATCCAGCTGGCGAATATGCTCCGTTCACAGGCTGCCCGCAGCTGGTACAGCAGTCTGACACTGTGGAGTGGGATGAC > 1:396140/1‑140 CGTTCGCGTGTGGTGTGGTTAGGGATGCGTCAGCCGCCACGCGGCTTAATCCAGCTGGCGAATATGCTCCGTTCACAGGCTGCCCGCAGCTGGTACAGCAGTCTGACACTGTGGAGTGGGATGACGCGCAAGGTACGCTG < 2:776995/140‑1 GCTGCCCGCAGCTGGTACAGCAGTCTGACACTGTGGAGTGGGATGACGCGCAAGGTACGCTGAAAGCCTGGCGTCGGCTACAAATCGGTCAGTTGACGGTGAAAGTGCAGCCGCTGGCGAAACCGTCAGAAGACGAGTTG > 2:423677/1‑140 CTGCCCGCAGCTGGTACAGCAGTCTGACACTGTGGAGTGGGATGACGCGCAAGGTACGCTGAAAGCCTGGCGTCGGCTACAAATCGGTCAGTTGACGGTGAAAGTGCAGCCGCTGGCGAAACCGTCAGAAGACGAGTTGC > 2:401529/1‑140 TGCCCGCAGCTGGTACAGCAGTCTGACACTGTGGAGTGGGATGACGCGCAAGGTACGCTGAAAGCCTGGCGTCGGCTACAAATCGGTAAGTTGACGGTGAAAGTGCAGCCGCTGGCGAAACCGTCAGAAGACGAGTTGCA < 2:396140/140‑1 GCCCGCAGCTGGTACAGCAGTCTGACACTGTGGAGTGGGATGACGCGCAAGGTACGCTGAAAGCCTGGCGTCGGCTACAAATCGGTCAGTTGACGGTGAAAGTGCAGCCGCTGGCGAAACCGTCAGAAGACGAGTTGCAT < 1:213641/140‑1 CCCGCAGCTGGTACAGCAGTCTGACACTGTGGAGTGGGATGACGCGCAAGGTACGCTGAAAGCCTGGCGTCGGCTACAAATCGGTCAGTTGACGGTGAAAGTGCAGCCGCTGGCGAAACCGTCAGAAGACGAGTTGCATC > 2:242879/1‑140 CCCGCAGCTGGTACAGCAGTCTGACACTGTGGAGTGGGATGACGCGCAAGGTACGCTGAAAGCCTGGCGTCGGCTACAAATCGGTCAGTTGACGGTGAAAGTGCAGCCGCTGGCGAAACCGT > 1:11915/1‑122 CCCGCAGCTGGTACAGCAGTCTGACACTGTGGAGTGGGATGACGCGCAAGGTACGCTGAAAGCCTGGCGTCGGCTACAAATCGGTCAGTTGACGGTGAAAGTGCAGCCGCTGGCGAAACCGT < 2:11915/122‑1 GCAGCTGGTACAGCAGTCTGACACTGTGGAGTGGGATGACGCGCAAGGTACGCTGAAAGCCTGGCGTCGGCTACAAATCGGTCAGTTGACGGTGAAAGTGCAGCCGCTGGCGAAACCGTCAGAAGACGAGTTGCATCAGG < 1:166505/140‑1 AGCTGGTACAGCAGTCTGACACTGTGGAGTGGGATGACGCGCAAGGTACGCTGAAAGCCTGGCGTCGGCTACAAATCGGTCAGTTGACGGTGAAAGTGCAGCCGCTGGCGAAACCGTCAGAAGACGAGTTGCATCAGGCG < 2:1085732/140‑1 GCTGGTACAGCAGTCTGACACTGTGGAGTGGGATGACGCGCAAGGTACGCTGAAAGCCTGGCGTCGGCTACAAATCGGTCAGTTGACGGTGAAAGTGCAGCCGCTGGCGAAACCGTCAGAAGACGAGTTGCATCAGGCGA < 2:932081/140‑1 CTGGTACAGCAGTCTGACACTGTGGAGTGGGATGACGCGCAAGGTACGCTGAAAGCCTGGCGTCGGCTACAAATCGGTCAGTTGACGGTGAAAGTGCAGCCGCTGGCGAAACCGTCAGAAGACGAGTTGCATCAGGCGAT < 1:30305/140‑1 ACGGATTCGTCAACCTGGTTTCACACTCACGCTTGATGACGCCGGACAATGGCTGCGTTCGCGTGTGGTGTGGTTAGGGATGCGTCAGCCGCCACGCGGCTTAATCCAGCTGGCGAATATGCTCCGTTCACAGGCTGCCCGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/161837‑161693‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgcccgcagcTGGTACAGCAGTCTGACACTGTGGAGTGGGATGACGCGCAAGGTACGCTGAAAGCCTGGCGTCGGCTACAAATCGGTCAGTTGACGGTGAAAGTGCAGCCGCTGGCGAAACCGTCAGAAGACGAGTTGCATCAGGCGAT > NC_000913/163801‑163939 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |