| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1460607 = | 12 (0.330) | 23 (0.630) | 21/276 | 0.6 | 69.7% | coding (137/423 nt) | paaI | phenylacetyl‑CoA thioesterase |
| ? | NC_000913 | = 1460668 | 8 (0.220) | coding (198/423 nt) | paaI | phenylacetyl‑CoA thioesterase | |||||
AGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCTTTGCCGGAGACACCTTAACTGCTACTGCGCAGGTACGTCATCAGGGCAAGCAAACCGGTGTTTACGACATCG > NC_000913/1460530‑1460807 | aGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACa > 2:514103‑M2/1‑139 (MQ=255) tgcacaaatgcttaacggtcatcaaagttgccacggcgggcagctattttcactggctgatactgcctttgcctacACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGc > 2:561334‑M1/77‑140 (MQ=255) gcgcTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACac > 2:77491‑M2/1‑138 (MQ=255) cgcTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACacg > 2:252648‑M2/1‑137 (MQ=255) cTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACacggt < 1:561334‑M2/140‑6 (MQ=255) aacggtcatcaaagttgccacggcgggcagctattttcactggctgatactgcctttgcctacACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAg > 1:339124‑M1/64‑140 (MQ=255) aTGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACacggtcatcaaagttgccacggcggg < 2:131706‑M2/140‑27 (MQ=255) aTGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACacggtcatcaaagttgccacggcggg > 2:332499‑M2/1‑114 (MQ=255) tgccacggcgggcagctattttcactggctgatactgcctttgcctacACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCa > 2:596447‑M1/49‑124 (MQ=255) tgccacggcgggcagctattttcactggctgatactgcctttgcctacACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCa < 1:596447‑M1/76‑1 (MQ=255) tttGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACacggtcatcaaagttgccacggcgggcagctattttca > 2:275473‑M2/1‑102 (MQ=255) tGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACacggtcatcaaagttgccacggcgggcagctattttcactggctgata > 1:17543‑M2/1‑92 (MQ=255) tGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACacggtcatcaaagttgccacggcgggcagctattttcactggctgata > 1:131706‑M2/1‑92 (MQ=255) tGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTAAacggtcatcaaagttgccacggcgggcagctattttcactggctgata > 2:77824‑M2/1‑92 (MQ=255) tGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACacggtcatcaaagttgccacggcgggcagctattttcactggctgatactgcct > 1:180048‑M2/1‑86 (MQ=255) tggctgatactgcctttgcctacACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCCGATACTGCCTTTGCCTACGCCCGCAATAGCCAGGGGCTGGCCGCCCTCGCTTCTGCCTGCCCCATtttttttt < 2:470181‑M1/117‑1 (MQ=255) atactgcctttgcctacACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTc < 2:238329‑M1/123‑1 (MQ=255) tGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACacggtcatcaaagttgccacggcgggcagctattttcactggctgatactgcctttgcctacgc > 2:561334‑M2/1‑76 (MQ=255) cacaAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACacggtcatcaaagttgccacggcgggcagctatttttcctgggcgattcttccttttcctcccccc < 2:54641‑M2/140‑67 (MQ=255) cctttgcctacACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCt < 2:313424‑M1/129‑1 (MQ=255) cctttgcctacACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCt > 1:313424‑M1/12‑140 (MQ=255) gcctacACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCTTTGcc < 1:403579‑M1/134‑1 (MQ=255) cACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCTTTGCCGgaga > 1:352358‑M1/2‑140 (MQ=255) cACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCTTTGCCGgaga < 1:22829‑M1/139‑1 (MQ=255) aaCGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACacggtcatcaaagttgccacggcgggcagctattttcactggctgatactgcctttgcctacgcctgcaatagccag > 1:339124‑M2/1‑63 (MQ=255) gTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCTTTGCCGGAGACAcc < 2:12470/140‑1 (MQ=255) gTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCTTTGCCGGAGACAcc < 1:470181/140‑1 (MQ=255) catcaAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCTTTGCCGGAGACACCtt > 2:114615/1‑140 (MQ=255) catcaAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCGGCAATAAACAGGGGCCGGCGGGCGTCGCTTCTTCCTGGCCGATTGATTTTTTGCGTCCAGGCTTTGCCGGCAACACCtt > 2:33452/1‑140 (MQ=255) tGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACacggtcatcaaagttgccacggcgggcagctattttcactggctgatactgcctttgcctacgcctgcaatagcca < 1:596447‑M2/124‑77 (MQ=255) tGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACacggtcatcaaagttgccacggcgggcagctattttcactggctgatactgcctttgcctacgcctgcaatagcca > 2:596447‑M2/1‑48 (MQ=255) aCGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCTTTGCCGGAGACACCTTAACTGCTACTgcg < 1:364838/140‑1 (MQ=255) ggCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCTTTGCCGGAGACACCTTAACTGCTACTGCGCAGGTa < 1:238329/140‑1 (MQ=255) ttCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCTTTTCCGGAGACACCTTAACTGCTACTGCGCAGGTACGTCATCAgg > 1:160046/1‑140 (MQ=255) tGGCTGATACTGCCTTTGCCTACacggtcatcaaagttgccacggcgggcagctattttcactggccgatactgcctttgcctacgcccgcaatagccaggggctggccgccctcgcttctgcctgccccattttttttt < 2:470181‑M2/140‑118 (MQ=255) gCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCTTTGCCGGAGACACCTTAACTGCTACTGCGCAGGTACGTCATCAGGgcaagca < 2:403579/140‑1 (MQ=255) aTACTGCCTTTGCCTACacggtcatcaaagttgccacggcgggcagctattttcactggctgatactgcctttgcctacgcctgcaatagccaggggctggcagccgtcgcttctgcctgcacgattgattttttgcgtc < 2:238329‑M2/140‑124 (MQ=255) ccTTTGCCTACacggtcatcaaagttgccacggcgggcagctattttcactggctgatactgcctttgcctacgcctgcaatagccaggggctggcagccgtcgcttctgcctgcacgattgattttttgcgtccaggct < 2:313424‑M2/140‑130 (MQ=255) ccTTTGCCTACacggtcatcaaagttgccacggcgggcagctattttcactggctgatactgcctttgcctacgcctgcaatagccaggggctggcagccgtcgcttctgcctgcacgattgattttttgcgtccaggct > 1:313424‑M2/1‑11 (MQ=255) gCCTACacggtcatcaaagttgccacggcgggcagctattttcactggctgatactgcctttgcctacgcctgcaatagccaggggctggcagccgtcgcttctgcctgcacgattgattttttgcgtccaggctttgcc < 1:403579‑M2/140‑135 (MQ=255) cacggtcatcaaagttgccacggcgggcagctattttcactggctgatactgcctttgcctacgcctgcaatagccaggggctggcagccgtcgcttctgcctgcacgattgattttttgcgtccaggctttgccggaga > 1:352358‑M2/1‑1 (MQ=255) cacggtcatcaaagttgccacggcgggcagctattttcactggctgatactgcctttgcctacgcctgcaatagccaggggctggcagccgtcgcttctgcctgcacgattgattttttgcgtccaggctttgccggaga < 1:22829‑M2/140‑140 (MQ=255) | AGCGCTTGGCATCGACATTATCTCAATGGATGAAGGCTTTGCTGTAGTGACCATGACCGTCACTGCACAAATGCTTAACGGTCATCAAAGTTGCCACGGCGGGCAGCTATTTTCACTGGCTGATACTGCCTTTGCCTACGCCTGCAATAGCCAGGGGCTGGCAGCCGTCGCTTCTGCCTGCACGATTGATTTTTTGCGTCCAGGCTTTGCCGGAGACACCTTAACTGCTACTGCGCAGGTACGTCATCAGGGCAAGCAAACCGGTGTTTACGACATCG > NC_000913/1460530‑1460807 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |