| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1590395 = | 61 (1.060) | 59 (1.020) | 47/276 | 0.1 | 49.2% | pseudogene (142/203 nt) | yneL | putative HTH‑type transcriptional regulator YneL |
| ? | NC_000913 | = 1590546 | 61 (1.060) | intergenic (‑10/+308) | yneL/hipA | putative HTH‑type transcriptional regulator YneL/serine/threonine kinase HipA | |||||
AGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1590533‑1590395‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTT < NC_000913/1590546‑1590416 AGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATT < 1:627655/140‑1 CACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAG < 2:649324/140‑1 ACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGC < 1:158072/140‑1 GTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAAT < 2:902838/140‑1 GTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAAT < 1:579733/140‑1 GTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAAT > 1:557178/1‑140 TATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATT < 2:865119/128‑1 TATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATT > 1:865119/1‑128 ATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGA < 1:81610/140‑1 AATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCAC < 2:791135/140‑1 ATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTATGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTAGCCCATTTCGGTCGTGAATATTCGCGGATTCAAGCGGGAATGAGTCCACT < 2:729060/140‑1 CTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGG > 1:921020/1‑140 CTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGG > 1:3155/1‑140 TCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGA < 1:755614/140‑1 CAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAA < 1:604064/140‑1 AGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCT > 1:909384/1‑140 AGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTAAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCT > 1:824541/1‑140 TCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTAC > 1:489186/1‑140 TCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAA < 2:428479/132‑1 TCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAA > 1:428479/1‑132 AGGCGACAGATGCTGAATGACCATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTAAGAAAGCCATCCCATTTCATTCGGGAATAATCGAGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGT < 2:897482/140‑1 GGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTC > 2:525064/1‑140 GGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTAAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTC < 2:824541/140‑1 CGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTC > 1:88694/1‑140 GATGCTGAATTAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGA > 1:617275/1‑140 CTGAATGAACATTACGATGTCACCACAGCAGCCTACGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTC > 2:32738/1‑140 ATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGC > 2:502992/1‑140 AACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGAC > 1:86817/1‑140 CATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAG < 1:525064/140‑1 ATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCAGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGA < 1:244164/140‑1 GTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAAT < 2:88694/140‑1 GTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAAT < 2:909384/140‑1 CACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGA > 1:799938/1‑140 CACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGC > 1:376869/1‑133 CACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGC < 2:376869/133‑1 AGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTA > 1:267437/1‑140 CCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCGACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATG > 2:498021/1‑140 ATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCA < 1:502992/140‑1 GTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACA < 2:557178/140‑1 TCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCATTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAG > 2:954813/1‑140 TCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAG > 1:581192/1‑140 TCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAG < 1:32738/140‑1 CGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGC > 1:647539/1‑140 GGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCA > 1:631358/1‑140 TTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGC < 2:921020/140‑1 TTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGC < 2:3155/140‑1 TACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCC > 1:146813/1‑140 ACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCT < 2:489186/140‑1 GCTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTG > 2:270775/1‑140 CTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTG < 1:404393/139‑1 CTATCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTG > 2:404393/1‑139 TCCCATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGG > 2:421043/1‑140 ATTTCAGTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTAC < 1:421043/140‑1 GTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTTATTGAAGTCAGGCGACAGATGCTGAATGAATATTACGATGTCACCACAGCAGTCTATGCTGTCGGCTACGAAAGC > 2:538601/1‑140 GTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGC < 1:954813/140‑1 GTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGC > 2:158072/1‑140 GTCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGC < 2:86817/140‑1 TCGGGAATATTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCT > 2:835860/1‑140 TTCGCGGATTCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTT < 2:581192/140‑1 AGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTTCAGTCGGGAATATTCGCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1590533‑1590395‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCAAGCGGGAATGAGTCCACTCCGGTATCAGAAATGGCTACGTCTCAATGAAGTCAGGCGACAGATGCTGAATGAACATTACGATGTCACCACAGCAGCCTATGCTGTCGGTTACGAAAGCTATCCCATTT < NC_000913/1590546‑1590416 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |