mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 45.0% | 34.6 / 27.4 | 40 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,111,747 | 0 | G | T | 39.3% | 50.6 / 18.5 | 28 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 753,125 | 0 | T | A | 35.0% | 67.5 / 19.3 | 40 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 2,001,918 | 0 | A | C | 31.6% | 55.7 / 18.9 | 38 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 3,206,435 | 0 | C | T | 31.4% | 54.6 / 20.0 | 35 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 753,105 | 0 | A | T | 31.1% | 93.8 / 15.1 | 45 | intergenic (‑310/+80) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 3,206,444 | 0 | T | A | 29.4% | 68.3 / 11.2 | 34 | intergenic (‑188/‑19) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 2,326,450 | 0 | T | G | 22.2% | 71.7 / 14.3 | 36 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 4,161,148 | 0 | G | A | 22.0% | 134.4 / 14.4 | 59 | E28K (GAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 38 (0.660) | 7 (0.130) | 6/258 | 4.5 | 14.1% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 50 (0.930) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | 3045988 = | 60 (1.040) | 7 (0.130) | 5/256 | 4.8 | 13.1% | intergenic (‑87/+180) | ygfF/gcvP | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase |
| ? | NC_000913 | 3046089 = | 37 (0.690) | intergenic (‑188/+79) | ygfF/gcvP | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase | |||||
| * | ? | NC_000913 | = 3045997 | 55 (0.950) | 5 (0.090) | 4/256 | 5.3 | 10.1% | intergenic (‑96/+171) | ygfF/gcvP | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase |
| ? | NC_000913 | = 3046078 | 38 (0.710) | intergenic (‑177/+90) | ygfF/gcvP | putative NAD(P)‑binding oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase | |||||
| * | ? | NC_000913 | = 3089140 | 63 (1.090) | 3 (0.050) | 3/272 | 6.0 | 4.6% | coding (857/1395 nt) | galP | galactose:H(+) symporter |
| ? | NC_000913 | 3089144 = | 61 (1.070) | coding (861/1395 nt) | galP | galactose:H(+) symporter | |||||
| * | ? | NC_000913 | = 1484872 | 69 (1.200) | 3 (0.050) | 3/268 | 6.0 | 4.3% | coding (1812/3903 nt) | hrpA | ATP‑dependent RNA helicase HrpA |
| ? | NC_000913 | 1484876 = | 68 (1.220) | coding (1816/3903 nt) | hrpA | ATP‑dependent RNA helicase HrpA | |||||
| * | ? | NC_000913 | = 633355 | 40 (0.690) | 3 (0.050) | 3/274 | 6.1 | 7.1% | coding (123/1089 nt) | hcxA | hydroxycarboxylate dehydrogenase A |
| ? | NC_000913 | 633359 = | 39 (0.680) | coding (119/1089 nt) | hcxA | hydroxycarboxylate dehydrogenase A | |||||