New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4309123 =	52 (1.100)	54 (1.150)	40/274	0.1	56.1%	coding (347/981 nt)	alsC	D‑allose ABC transporter membrane subunit
	?	NC_000913	= 4309833	33 (0.700)					coding (1148/1533 nt)	alsA	D‑allose ABC transporter ATP binding subunit

AGTTTTTCGCTATCCTGGTCGCTGGTATCGACCTCTCGGTTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4309261‑4309123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCAGAAAGTCCTGATCTCCAAATGGCTGTGCTGTTGCCCGG  <  NC_000913/4309833‑4309696                                                                                                                                                                                                                                                                                       AGTTTTTCGCTATCCTGGTCGCTGGTATCGACCTCTCGGTTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGT                                                                                                                                           >  1:404047/1‑140                  GTCGCTGGTATCGACCTCTCGGTTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCG                                                                                                                          >  2:211019/1‑140                       TGGTATCGACCTCTCGGTTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAA                                                                                                                     >  2:259854/1‑140                       TGGTATCGACCTCTCGGTTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAA                                                                                                                     >  2:755077/1‑140                       TGGTATCGACCTCTCGGTTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAA                                                                                                                     >  2:387064/1‑140                            TCGACCTCTCGGTTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCA                                                                                                                >  1:149852/1‑140                               ACCTCTCGGTTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACG                                                                                                             <  1:462681/140‑1                               ACCTCTCGGTTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCCGAAAATCAACG                                                                                                             >  1:523647/1‑140                                 CTCTCGGTTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCG                                                                                                           <  1:387064/140‑1                                   CTCGGTTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAA                                                                                                         <  1:704549/140‑1                                    TCGGTTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAAC                                                                                                        >  1:769653/1‑140                                       GTTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTAGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGC                                                                                                     <  2:540262/140‑1                                        TTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCT                                                                                                    <  2:404047/140‑1                                        TTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCT                                                                                                    <  1:211019/140‑1                                         TGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTG                                                                                                   <  2:769653/140‑1                                          GGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGG                                                                                                  <  1:441928/140‑1                                            CGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCG                                                                                                <  2:434518/140‑1                                            CGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCG                                                                                                <  1:80879/140‑1                                                ATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGA                                                                                            >  2:734660/1‑140                                                 TTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAA                                                                                           <  1:734660/140‑1                                                  TCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAA                                                                                          >  1:272401/1‑140                                                       CGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCA                                                                                     <  1:231422/140‑1                                                             CCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGT                                                                               <  2:647008/140‑1                                                              CGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTA                                                                              <  2:136320/140‑1                                                                 TATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAAC                                                                           <  1:711193/140‑1                                                                     GTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGA                                                                       >  1:344863/1‑140                                                                      TGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAA                                                                      >  2:552478/1‑140                                                                      TGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAAC                                                                           >  1:23720/1‑135                                                                      TGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAAC                                                                           <  2:23720/135‑1                                                                         CCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATAT                                                                   >  2:370637/1‑140                                                                          CGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATC                                                                  >  1:478855/1‑140                                                                          CGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATC                                                                  >  2:522858/1‑140                                                                          CGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATC                                                                  >  2:429150/1‑140                                                                          CGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATC                                                                  >  1:662876/1‑140                                                                          CGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTA                                                                              <  1:782403/128‑1                                                                          CGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTA                                                                              >  2:782403/1‑128                                                                           GCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATA                                                                    <  2:116612/137‑1                                                                           GCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATA                                                                    >  1:116612/1‑137                                                                              AAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCG                                                              <  1:522858/140‑1                                                                              AAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCG                                                              <  1:711416/140‑1                                                                                     TGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTC                                                       <  2:478855/140‑1                                                                                                    ACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCA                                        >  1:720002/1‑140                                                                                                      CCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCAGA                                      <  1:259854/140‑1                                                                                                              CGCAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCAGAAAGTCCTG                              >  2:170933/1‑140                                                                                                                CAGCGATGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCAGAAAGTCCTGAT                            <  1:370637/140‑1                                                                                                                      TGATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCAGAAAGTCCTGATCTCCAA                      >  2:361509/1‑140                                                                                                                       GATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCAGAAAGTCCTGATCTCCAAA                     <  2:620392/140‑1                                                                                                                       GATTGGCGGTGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCAGAAAGTCCTGATCTCCAAA                     <  2:662876/140‑1                                                                                                                                TGTACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCAGAAAGTCCTGATCTCCAAATGGCTGTGC            >  2:107601/1‑140                                                                                                                                  TACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCAGAAAGTCCTGATCTCCAAATGGCTGTGCTG          >  2:368312/1‑140                                                                                                                                  TACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCAGAAAGTCCTGATCTCCAAATGGCTGTGCTG          >  1:745386/1‑140                                                                                                                                  TACTGGTTGGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCAGAAAGTCCTGATCTCCAAATGGCTGTGCTG          <  1:170933/140‑1                                                                                                                                          GGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCAGAAAGTCCTGATCTCCAAATGGCTGTGCTGTTGCCCGG  <  2:272401/140‑1                                                                                                                                          GGTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCAGAAAGTCCTGATCTCCAAATGGCTGTGCTGTTGCCCGG  >  1:574800/1‑140                                                                                                                                                                                                                                                                                       AGTTTTTCGCTATCCTGGTCGCTGGTATCGACCTCTCGGTTGGCGCGATTCTGGCGCTTTCCGGTATGGTGACCGCCAAACTGATGTTGGCAGGTGTTGACCCGTTTCTCGCAGCGATGATTGGCGGTGTACTGGTTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4309261‑4309123 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gTTGACGAGCAACGTACCGCTGAAAATCAACGCGAACTGCTGGCGCTGAAATGTCATTCGGTAAACCAGAATATCACCGAACTCTCCGGGGGAAATCAGCAGAAAGTCCTGATCTCCAAATGGCTGTGCTGTTGCCCGG  <  NC_000913/4309833‑4309696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.