breseq  version 0.35.4  revision f352f80f4bc9 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Marginal read alignment evidence
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,604,344	0	C	T	44.8%	23.7 / 19.4	29	S62F (TCT→TTT)	bglJ	DNA‑binding transcriptional regulator BglJ
*	NC_000913	753,125	0	T	A	40.6%	40.5 / 20.8	32	intergenic (‑330/+60)	ybgD/gltA	putative fimbrial protein YbgD/citrate synthase
*	NC_000913	1,825,061	0	G	A	36.4%	29.0 / 10.3	22	intergenic (‑124/+79)	ves/spy	HutD family protein Ves/ATP‑independent periplasmic chaperone
*	NC_000913	3,404,215	0	T	G	33.3%	43.0 / 10.8	30	G244G (GGT→GGG)	yhdH	acrylyl‑CoA reductase
*	NC_000913	650,809	0	T	G	30.8%	63.6 / 10.4	39	T350P (ACC→CCC)	citC	citrate lyase synthetase
*	NC_000913	4,296,060	0	C	T	29.5%	76.5 / 31.7	44	intergenic (+266/+376)	gltP/yjcO	glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO
*	NC_000913	2,326,450	0	T	G	28.6%	65.5 / 22.5	42	G114G (GGT→GGG)	atoB	acetyl‑CoA acetyltransferase
*	NC_000913	753,105	0	A	T	22.0%	126.7 / 13.4	50	intergenic (‑310/+80)	ybgD/gltA	putative fimbrial protein YbgD/citrate synthase

Marginal new junction evidence (sorted from low to high skew)
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4542690	33 (0.700)	4 (0.090)	4/258	4.0	9.8%	intergenic (+57/‑425)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit
	?	NC_000913	= 4542986	43 (0.980)					intergenic (+353/‑129)	fimE/fimA	regulator for fimA/type 1 fimbriae major subunit