New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1639183	46 (0.690)	6 (0.090)	5/270	5.5	11.7%	coding (345/498 nt) coding (152/255 nt)	rzpQ rzoQ	Qin prophage; DUF2514 domain‑containing protein RzpQ Qin prophage; putative lipoprotein RzoQ
	?	NC_000913	1639187 =	46 (0.710)					coding (341/498 nt) coding (148/255 nt)	rzpQ rzoQ	Qin prophage; DUF2514 domain‑containing protein RzpQ Qin prophage; putative lipoprotein RzoQ
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTAACACTATCAGACAGATAAGCAGCCCTGGCAGAAATTTCAGCAGATTTCT  >  NC_000913/1639053‑1639325                                                                                                                                       |                                                                                                                                           ttAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCct                                                                                                                                       >  1:840171/1‑140 (MQ=255)           aTAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAg                                                                                                                             >  1:1043038/1‑140 (MQ=255)           aTAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAg                                                                                                                             >  2:114371/1‑140 (MQ=255)                  tGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTTCCTCTGACGGCCGCGGCAAg                                                                                                                      >  2:280853/1‑140 (MQ=255)                    ttGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGAt                                                                                                                    <  2:714069/140‑1 (MQ=255)                    ttGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGAt                                                                                                                    >  1:48/1‑140 (MQ=255)                    ttGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGAt                                                                                                                    >  1:799411/1‑140 (MQ=255)                     tGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATc                                                                                                                   >  1:369465/1‑140 (MQ=255)                         aaGTCGCTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCg                                                                                                               >  1:1073742/1‑140 (MQ=255)                         aaGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTg                                                                                                                 >  1:19332/1‑138 (MQ=255)                         aaGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTg                                                                                                                 <  2:19332/138‑1 (MQ=255)                           gTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAg                                                                                                                      <  2:780863/131‑1 (MQ=255)                           gTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAg                                                                                                                      >  1:780863/1‑131 (MQ=255)                              aCTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTTGTTGTTTTTCCTCTGACGGCAGCGGCAAGATCTGCGGGATg                                                                                                          >  2:297212/1‑140 (MQ=255)                              aCTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATg                                                                                                          <  2:184197/140‑1 (MQ=255)                              aCTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATg                                                                                                          >  2:429789/1‑140 (MQ=255)                              aCTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTT‑‑‑TTGTTTTTCCTCTGACGGCCGCGGCAAGATCTGCGGGATGCtt                                                                                                       >  2:735570/1‑140 (MQ=255)                              aCTCCTGCGATGTAGCGTTCGTCAGCAATTTCAACATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGGTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGGATg                                                                                                          >  2:984508/1‑140 (MQ=255)                                     cGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCt                                                                                                   >  1:310520/1‑140 (MQ=255)                                          tAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTc                                                                                              >  1:1120838/1‑140 (MQ=255)                                          tAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTc                                                                                              >  2:719718/1‑140 (MQ=255)                                            gCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTTTTTTGCCTCTTATGGCCGCGGCGAGATCTTCGGTTTTCTTCGCTGCGTCaa                                                                                            >  2:1027367/1‑140 (MQ=255)                                               ttCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTTGTTGTTTTTCCTCTGACGGCAGCGGCAAGATCTGCGGGATGCTTCGCTGCGTCAAggg                                                                                         >  2:178380/1‑139 (MQ=255)                                               ttCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCg                                                                                                     >  1:606286/1‑128 (MQ=255)                                               ttCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCg                                                                                                     <  2:606286/128‑1 (MQ=255)                                                 cGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGt                                                                                       <  2:50055/140‑1 (MQ=255)                                                    cAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGGTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGGGTATg                                                                                    >  1:243291/1‑140 (MQ=255)                                                       cAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCa                                                                                 <  2:1120838/140‑1 (MQ=255)                                                                         gAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCa                                                               <  2:428835/140‑1 (MQ=255)                                                                          aGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGGATGGCATATTTTTTTGCTTCGGCAc                                                              >  2:611579/1‑140 (MQ=255)                                                                              tCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGTATATTTTTTTGCTTCGGCACGCaa                                                          <  2:70859/140‑1 (MQ=255)                                                                               ctgctgCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTTGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGGATGGGATATTTTTTTTCTTCGGCACGCAAc                                                         >  2:724030/1‑140 (MQ=255)                                                                                    gcAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGtt                                                    <  2:48/140‑1 (MQ=255)                                                                                      aaTATCTCCGAGCATGTTGGTGGGCATTCCTTCGGCTGTTTTGGTTGTTTTGCCTCTGACGGCAGCGTCAAGATCTGCGGTAAGCTCCGATGTGCCAAGTCGTATGGAATATTTTTTTGCTTCAGCTCGCAACTGGTTaa                                                  <  2:269138/140‑1 (MQ=255)                                                                                      aaTATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTaa                                                  <  1:429789/140‑1 (MQ=255)                                                                                       atatCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTAac                                                 >  2:702381/1‑140 (MQ=255)                                                                                          tctcCGAGCATGTTGGTGAGCATTCCTTCGGCGGCTTTG‑‑‑GTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGGATTCTTTGCTGCGGCAAAGCGGATGGCATATTTTTTTTCTTCTGCACGCAACTGGTTAACACTATc                                           >  2:41447/1‑140 (MQ=255)                                                                                           ctcCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTG‑‑‑GTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTAACACTATca                                          <  1:735570/140‑1 (MQ=255)                                                                                            tcCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTAACACTAt                                            <  2:1073742/140‑1 (MQ=255)                                                                                                     gTTGGTGAGCATTCCTTCGGCGGTTTTTGTTGTTTTTCCTCTCACGGCAGCGGGAAGATTTGCGGGATGCTTCGCTGCGTCAAGGGGGATGGCATATTTTTTTGCTTCGGCACGCAACTGGGTAACACCATtagacagaa                                   >  2:485762/1‑139 (MQ=255)                                                                                                     gTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGGATGCTTCGCTGCGTCAAGGCGGATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTAACACTATCAGACAGAt                                   >  2:368262/1‑140 (MQ=255)                                                                                                      ttGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTaa                                                  >  1:95140/1‑124 (MQ=255)                                                                                                      ttGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTaa                                                  <  2:95140/124‑1 (MQ=255)                                                                                                              cATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGGATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTTCTTCGGCACGCAACTGGTTAACACTATCAGACAGATAAGCAGccc                          >  1:425123/1‑140 (MQ=255)                                                                                                              cATTCCTTCGGCGGTTTTGG‑‑GTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTAACACTATCAGACAGATAagccctggca                        >  1:324867/1‑133 (MQ=255)                                                                                                              cATTCCTTCGGCGGTTTTGG‑‑GTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTAACACTATCAGACAGATAagccctggca                        >  1:49844/1‑133 (MQ=255)                                                                                                                      cggcggTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTAACACTATCAGACAGATAAGCAGCCCTGGCAGaa                  >  1:398953/1‑140 (MQ=255)                                                                                                                        gcggTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTAACACTATCAGACAGATAAGCAGCCCTGGCAGAAAt                >  2:123903/1‑140 (MQ=255)                                                                                                                           gTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTAACACTATCAGACAGATAAGCAGCCCTGGCAGAAATTTc             >  2:423729/1‑140 (MQ=255)                                                                                                                             tttGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTAACACTATCAGACAGATAAGCAGCCCTGGCAGAAATTTcag           <  1:423729/140‑1 (MQ=255)                                                                                                                               tGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTAACACTATCAGACAGATAAGCAGCCCTGGCAGAAATTTcagca         <  2:799411/140‑1 (MQ=255)                                                                                                                                      tttGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTAACACTATCAGACAGATAAGCAGCCCTGGCAGAAATTTCAGCAGATTTCt  >  2:92175/1‑140 (MQ=255)                                                                                                                                       |                                                                                                                                           TTAAAGATTCATAGATCTGTTGACAAGTCACTCCTGCGATGTAGCGTTCGTCAGCAATTTCAGCATAAAGCTGAGCTTCTGCTGCAATATCTCCGAGCATGTTGGTGAGCATTCCTTCGGCGGTTTTGGTTGTTTTGCCTCTGACGGCAGCGGCAAGATCTGCGGTATGCTTCGCTGCGTCAAGGCGTATGGCATATTTTTTTGCTTCGGCACGCAACTGGTTAACACTATCAGACAGATAAGCAGCCCTGGCAGAAATTTCAGCAGATTTCT  >  NC_000913/1639053‑1639325

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.