BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	104 (1.490)	124 (1.800)	64/274	0.0	69.8%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
*	?	NC_000913	3766087 =	4 (0.060)	124 (1.800)	64/274	0.0	69.8%	coding (3905/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 234 total aligned reads displayed.

CCAATGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACTATATATTGT  >  NC_000913/3362862‑3363140

     tagttcctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTaaa                                                                                                                                          <  1:560782‑M1/6‑1 (MQ=255)

        ttcctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATgg                                                                                                                                       <  2:969574‑M1/9‑1 (MQ=255)

         aTGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGc                                                                                                                                      >  2:106416/1‑140 (MQ=255)

         aTGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGc                                                                                                                                      >  2:377240/1‑140 (MQ=255)

          tGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCg                                                                                                                                     >  1:363254/1‑140 (MQ=255)

                gtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattaacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGaaaaaa                                                                                                                               >  1:1015406‑M1/124‑140 (MQ=255)

                    gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑gg                                                                                                                          >  2:90095‑M1/120‑140 (MQ=255)

                    gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑gg                                                                                                                          >  1:397581‑M1/120‑140 (MQ=255)

                    aTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑gg                                                                                                                          >  2:699093/1‑140 (MQ=255)

                      tGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCa                                                                                                                        >  2:851140/1‑140 (MQ=255)

                       gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCaa                                                                                                                       >  2:936623/1‑140 (MQ=255)

                       gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAA‑GGCAAc                                                                                                                      >  2:170165/1‑140 (MQ=255)

                                gggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑gg                                                                                                                          <  2:306457‑M1/21‑1 (MQ=255)

                                     ttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCt                                                                                                         >  2:216877‑M1/103‑140 (MQ=255)

                                     ttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCt                                                                                                         >  1:1055801‑M1/103‑140 (MQ=255)

                                           ggAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTtgatg                                                                                                   >  2:650512/1‑140 (MQ=255)

                                           ggAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTtgatg                                                                                                   >  2:575294/1‑140 (MQ=255)

                                                   cagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGc                                                                                           <  2:1035390‑M1/52‑1 (MQ=255)

                                                        tctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                      >  1:468422‑M1/84‑140 (MQ=255)

                                                           gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                   >  1:738380‑M1/81‑140 (MQ=255)

                                                           gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                   <  2:830428‑M1/60‑1 (MQ=255)

                                                           gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                   <  1:531108‑M1/60‑1 (MQ=255)

                                                           cTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                   >  2:524211/1‑140 (MQ=255)

                                                           cTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                   >  2:747538/1‑140 (MQ=255)

                                                              atttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCt                                                                                >  1:340164‑M1/78‑140 (MQ=255)

                                                               tttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCtt                                                                               <  2:347444‑M1/64‑1 (MQ=255)

                                                                 tattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGa                                                                             >  1:576105‑M1/75‑140 (MQ=255)

                                                                    tatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTc                                                                                 <  1:236293‑M1/62‑1 (MQ=255)

                                                                    gATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCa                                                                          >  2:603144/1‑140 (MQ=255)

                                                                      tCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                        <  1:650512/140‑1 (MQ=255)

                                                                        tcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCa                                                                      <  1:514599‑M1/73‑1 (MQ=255)

                                                                        cTAATATATCGCATTATTTTTCCCGTTCAGCCAGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCa                                                                      >  1:150669/1‑140 (MQ=255)

                                                                         tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                     >  1:1003736/1‑140 (MQ=255)

                                                                          aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                    >  1:949288/1‑140 (MQ=255)

                                                                           ttgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAttt                                                                   <  2:78226‑M1/76‑1 (MQ=255)

                                                                            tgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTc                                                                  >  1:199251‑M1/64‑140 (MQ=255)

                                                                               atCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGc                                                               >  2:235663/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                             >  2:904387/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                             >  2:770456/1‑140 (MQ=255)

                                                                                  gatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGa                                                                             <  2:1181382‑M1/66‑1 (MQ=255)

                                                                                   cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaaca                                                           >  1:1108593/1‑140 (MQ=255)

                                                                                      tattTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                        >  2:1127983/1‑140 (MQ=255)

                                                                                      agttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                        >  1:347444‑M1/54‑140 (MQ=255)

                                                                                            ccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGttt                                                  <  2:1165548‑M1/93‑1 (MQ=255)

                                                                                             cctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                        >  1:299514‑M1/47‑133 (MQ=255)

                                                                                              ctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCCTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                        >  2:875677‑M1/46‑132 (MQ=255)

                                                                                                gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                              <  1:1091180‑M1/97‑1 (MQ=255)

                                                                                                gTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                              >  1:248059/1‑140 (MQ=255)

                                                                                                 tgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaaa                                             <  2:1133542‑M1/98‑1 (MQ=255)

                                                                                                  gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaaa                                             <  1:426462‑M1/99‑1 (MQ=255)

                                                                                                  gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                            <  1:1177660‑M1/99‑1 (MQ=255)

                                                                                                  gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                            <  1:1149364‑M1/99‑1 (MQ=255)

                                                                                                  gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                            <  2:438208‑M1/99‑1 (MQ=255)

                                                                                                     tgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTcc                                         <  1:287757‑M1/102‑1 (MQ=255)

                                                                                                      cccGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCt                                        >  1:21613/1‑140 (MQ=255)

                                                                                                       caacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCtt                                       >  1:639834‑M1/37‑140 (MQ=255)

                                                                                                          ttttttGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTg                                    <  1:904387/140‑1 (MQ=255)

                                                                                                             ttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                 <  2:669374‑M1/110‑1 (MQ=255)

                                                                                                             ttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                 <  2:144381‑M1/110‑1 (MQ=255)

                                                                                                                   gagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaaaaa                           >  1:993569‑M1/25‑140 (MQ=255)

                                                                                                                       agctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑Tgg                      >  1:78226‑M1/21‑140 (MQ=255)

                                                                                                                          tatTCCCTGTTAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTAATG‑AAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGt                  <  1:584801/140‑1 (MQ=255)

                                                                                                                            tcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAAATGGCTGt                  >  2:732303‑M1/16‑140 (MQ=255)

                                                                                                                             tattggtatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTa                >  2:853392‑M1/15‑140 (MQ=255)

                                                                                                                             tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTa                <  1:845871/140‑1 (MQ=255)

                                                                                                                             tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTa                <  2:180443/140‑1 (MQ=255)

                                                                                                                             tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTa                <  2:720144/140‑1 (MQ=255)

                                                                                                                             tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTa                <  2:479517/140‑1 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTa                >  1:120966‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTa                >  2:542624‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTa                >  2:12971‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTa                >  2:290487‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTa                >  1:494434‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTa                >  2:1051688‑M1/15‑140 (MQ=255)

                                                                                                                              cACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTAc               >  2:506231/1‑140 (MQ=255)

                                                                                                                              attgttatatctaAGTAAATGGCGAAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTa                >  2:426462‑M1/14‑140 (MQ=255)

                                                                                                                               aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTa                <  1:722275/138‑1 (MQ=255)

                                                                                                                               aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACg              >  2:6361/1‑140 (MQ=255)

                                                                                                                               aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACg              >  1:719912/1‑140 (MQ=255)

                                                                                                                               aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACg              >  2:248382/1‑140 (MQ=255)

                                                                                                                               aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACg              >  2:982890/1‑140 (MQ=255)

                                                                                                                                tgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGa             >  1:886958‑M1/12‑140 (MQ=255)

                                                                                                                                tgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGa             >  1:962379‑M1/12‑140 (MQ=255)

                                                                                                                                cTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGa             <  2:111413/140‑1 (MQ=255)

                                                                                                                                   tatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACta          <  1:436879‑M1/132‑1 (MQ=255)

                                                                                                                                   aTAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACta          >  2:96020/1‑140 (MQ=255)

                                                                                                                                    tAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACtat         >  1:617782/1‑140 (MQ=255)

                                                                                                                                    atatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACtat         <  1:452418‑M1/133‑1 (MQ=255)

                                                                                                                                      gTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACt           <  2:533838/136‑1 (MQ=255)

                                                                                                                                      gTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACt           >  1:533838/1‑136 (MQ=255)

                                                                                                                                       tctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACtatata      >  2:514599‑M1/5‑140 (MQ=255)

                                                                                                                                       tATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACtatata      <  2:949288/140‑1 (MQ=255)

                                                                                                                                         tCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACTATATAtt    >  1:816123/1‑140 (MQ=255)

                                                                                                                                         tCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTG‑AACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACTATATATTg   >  1:17501/1‑140 (MQ=255)

                                                                                                                                          aAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGtt                 <  1:929397‑M1/125‑1 (MQ=255)

                                                                                                                                          aAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACTATATATTg   <  2:1001795‑M1/139‑1 (MQ=255)

                                                                                                                                          aAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACTATATATTg   <  1:97806‑M1/139‑1 (MQ=255)

                                                                                                                                           AGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACt           <  1:184875‑M1/131‑1 (MQ=255)

                                                                                                                                           AGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACTATATATTGt  >  1:1101143‑M1/1‑140 (MQ=255)

                                                                                                                                           AGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACTATATATTGt  <  2:580858‑M1/140‑1 (MQ=255)

CCAATGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAA‑TGGCTGTTACGACTATATATTGT  >  NC_000913/3362862‑3363140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.