mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,918 | 0 | A | C | 40.0% | 53.4 / 25.5 | 45 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 3,926,366 | 0 | A | C | 38.2% | 74.2 / 25.0 | 55 | G30G (GGT→GGG) | mioC | flavoprotein MioC |
| * | NC_000913 | 4,604,344 | 0 | C | T | 34.7% | 68.1 / 27.3 | 49 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,111,747 | 0 | G | T | 34.5% | 54.4 / 17.8 | 29 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 3,206,435 | 0 | C | T | 33.3% | 31.6 / 13.7 | 24 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 29,496 | 0 | T | A | 31.0% | 56.2 / 10.0 | 29 | intergenic (+301/‑155) | dapB/carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/carbamoyl phosphate synthetase subunit alpha |
| * | NC_000913 | 376,401 | 0 | T | G | 26.2% | 79.8 / 11.4 | 42 | L315V (TTG→GTG) | mhpT | 3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| * | NC_000913 | 650,809 | 0 | T | G | 25.6% | 83.0 / 11.8 | 43 | T350P (ACC→CCC) | citC | citrate lyase synthetase |
| * | NC_000913 | 4,296,060 | 0 | C | T | 25.0% | 95.6 / 27.5 | 48 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,577,123 | 0 | A | C | 24.1% | 113.7 / 11.1 | 54 | V166G (GTA→GGA) | yddB | putative TonB‑dependent receptor |
| * | NC_000913 | 2,326,450 | 0 | T | G | 24.0% | 43.9 / 10.6 | 25 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 372,640 | 0 | T | G | 22.0% | 107.0 / 10.2 | 50 | L176V (TTA→GTA) | mhpD | 2‑hydroxypentadienoate hydratase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 47 (0.900) | 5 (0.100) | 5/256 | 4.0 | 10.7% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 40 (0.820) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4010644 | 63 (1.230) | 5 (0.100) +TCA |
3/262 | 4.9 | 7.4% | coding (445/801 nt) | yigL | phosphosugar phosphatase YigL |
| ? | NC_000913 | 4010645 = | 63 (1.200) | coding (446/801 nt) | yigL | phosphosugar phosphatase YigL | |||||