BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	87 (1.550)	105 (1.880)	53/272	0.1	70.6%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
*	?	NC_000913	3766087 =	1 (0.020)	105 (1.880)	53/272	0.1	70.6%	coding (3905/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 202 total aligned reads displayed.

CCAATGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362862‑3363140

tcaattagttcctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaa                                                                                                                                                <  1:189596‑M1/1‑1 (MQ=255)

tcaattagttcctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaa                                                                                                                                                <  2:716313‑M1/1‑1 (MQ=255)

tcaattagttcctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaa                                                                                                                                                <  2:363177‑M1/1‑1 (MQ=255)

    ttagttcctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTaa                                                                                                                                            <  1:857465‑M1/5‑1 (MQ=255)

    ttagttcctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTaa                                                                                                                                            >  2:618354‑M1/136‑140 (MQ=255)

         aTGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGc                                                                                                                                       >  1:729214/1‑140 (MQ=255)

                   gaTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAACTGGCGAAAAAAAA‑g                                                                                                                            >  2:446952/1‑140 (MQ=255)

                   gaTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGaaaaaaagg                                                                                                                             >  1:747753/1‑138 (MQ=255)

                    gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑gg                                                                                                                           >  2:334103‑M1/120‑140 (MQ=255)

                         cGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACa                                                                                                                      >  1:927267/1‑140 (MQ=255)

                                   ttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTAcgcg                                                                                                            >  2:189596‑M1/105‑140 (MQ=255)

                                     ttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑gg                                                                                                                           >  1:364643‑M1/103‑123 (MQ=255)

                                        tCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTtg                                                                                                       >  1:426985/1‑140 (MQ=255)

                                               aCATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGaaaa                                                                                                >  1:380737/1‑140 (MQ=255)

                                                  ttAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATgg                                                                                             <  2:631622/140‑1 (MQ=255)

                                                      aaTCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑Ac                                                                                        >  1:569247/1‑140 (MQ=255)

                                                       aTCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACa                                                                                       <  2:343986/140‑1 (MQ=255)

                                                       aTCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACa                                                                                       <  1:304687/140‑1 (MQ=255)

                                                        tctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACAt                                                                                      <  2:116997‑M1/57‑1 (MQ=255)

                                                           gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTg                                                                                   <  1:671540‑M1/60‑1 (MQ=255)

                                                            tAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGt                                                                                  >  2:510063/1‑140 (MQ=255)

                                                             catttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTc                                                                                 >  2:653196‑M1/79‑140 (MQ=255)

                                                                 tattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGa                                                                             >  2:440486‑M1/75‑140 (MQ=255)

                                                                  tAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑t                                                                           >  2:371180/1‑140 (MQ=255)

                                                                      tCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAgg                                                                       <  2:426985/140‑1 (MQ=255)

                                                                       gtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGc                                                                      >  1:802125‑M1/69‑140 (MQ=255)

                                                                          aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTg                                                                                   <  2:347169/125‑1 (MQ=255)

                                                                          aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCAtt                                                                   >  2:641423/1‑140 (MQ=255)

                                                                          aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCAtt                                                                   >  2:622997/1‑140 (MQ=255)

                                                                          aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCAtt                                                                   >  2:739606/1‑140 (MQ=255)

                                                                           ttgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGc                                                                      >  2:846159‑M1/65‑136 (MQ=255)

                                                                               atCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAGGGAAACATT‑CTTCGGGCTTTTGTTAAAAAGGCGAACATTTG‑CTTGATTAAGGCAtttttc                                                               >  2:23738/1‑137 (MQ=255)

                                                                               atCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGc                                                              >  2:30148/1‑140 (MQ=255)

                                                                               atCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGc                                                              >  1:900841/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCAt                                                                    <  1:413451/132‑1 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCAt                                                                    >  2:591039/1‑132 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGcaa                                                            >  1:571778/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGcaa                                                            >  1:68311/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGcaa                                                            >  1:488473/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGcaa                                                            >  2:542308/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGcaa                                                            >  1:366003/1‑140 (MQ=255)

                                                                                 cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGcaa                                                            >  1:880003/1‑140 (MQ=255)

                                                                                  gatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGcaac                                                           <  1:914335‑M1/83‑1 (MQ=255)

                                                                                  gatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGcaac                                                           <  2:911155‑M1/83‑1 (MQ=255)

                                                                                      agttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGc                                                       >  1:214586‑M1/54‑140 (MQ=255)

                                                                                          tttCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGt                                                   <  1:620416/140‑1 (MQ=255)

                                                                                            tCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGttt                                                 >  2:460288/1‑140 (MQ=255)

                                                                                             cctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTa                                                <  1:376826‑M1/94‑1 (MQ=255)

                                                                                             cctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTa                                                <  1:385673‑M1/94‑1 (MQ=255)

                                                                                             cctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTa                                                <  1:456180‑M1/94‑1 (MQ=255)

                                                                                                gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:753293‑M1/97‑1 (MQ=255)

                                                                                                gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  2:698345‑M1/97‑1 (MQ=255)

                                                                                                gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:356542‑M1/97‑1 (MQ=255)

                                                                                                gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCCGCAACAAGCCGGTTTaaaa                                             <  1:47093‑M1/97‑1 (MQ=255)

                                                                                                  tCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           >  2:261196/1‑140 (MQ=255)

                                                                                                  gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  2:882705‑M1/99‑1 (MQ=255)

                                                                                                             ttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                <  1:164383‑M1/110‑1 (MQ=255)

                                                                                                             ttccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                <  1:98098‑M1/110‑1 (MQ=255)

                                                                                                               ccacgagaagctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaagaa                              <  1:521321‑M1/112‑1 (MQ=255)

                                                                                                                       gAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                      <  2:777620/140‑1 (MQ=255)

                                                                                                                       agctatcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                      >  2:164383‑M1/21‑140 (MQ=255)

                                                                                                                           atcattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  1:502231‑M1/17‑140 (MQ=255)

                                                                                                                           atTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:777906/140‑1 (MQ=255)

                                                                                                                             tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:348882/140‑1 (MQ=255)

                                                                                                                             tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:714809/140‑1 (MQ=255)

                                                                                                                             tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:300319/140‑1 (MQ=255)

                                                                                                                             tCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:311901/1‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCTGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:684468‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:833060‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:784142‑M1/15‑140 (MQ=255)

                                                                                                                             cattgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:566444‑M1/15‑140 (MQ=255)

                                                                                                                               ttgttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  2:497747‑M1/13‑140 (MQ=255)

                                                                                                                               aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  1:344144/1‑136 (MQ=255)

                                                                                                                               aCTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:348523/138‑1 (MQ=255)

                                                                                                                                 tGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            >  1:372396/1‑140 (MQ=255)

                                                                                                                                 gttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            <  1:111257‑M1/130‑1 (MQ=255)

                                                                                                                                 gttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            >  2:299965‑M1/11‑140 (MQ=255)

                                                                                                                                  ttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  2:381478‑M1/10‑140 (MQ=255)

                                                                                                                                  ttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  2:471787‑M1/10‑140 (MQ=255)

                                                                                                                                  ttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  2:75270‑M1/131‑1 (MQ=255)

                                                                                                                                  ttatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  2:392245‑M1/10‑140 (MQ=255)

                                                                                                                                  gATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             <  1:283215/138‑1 (MQ=255)

                                                                                                                                  gATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  2:283215/1‑138 (MQ=255)

                                                                                                                                  gATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  1:542308/140‑1 (MQ=255)

                                                                                                                                  gATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  2:421622/140‑1 (MQ=255)

                                                                                                                                   tatatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  1:695535‑M1/9‑139 (MQ=255)

                                                                                                                                    atatctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat         <  1:331624‑M1/133‑1 (MQ=255)

                                                                                                                                      atctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCTGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  2:575487‑M1/131‑1 (MQ=255)

                                                                                                                                      atctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCTGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  1:575487‑M1/6‑136 (MQ=255)

                                                                                                                                      atctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                      >  2:810338‑M1/6‑125 (MQ=255)

                                                                                                                                      atctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatat       <  2:793741‑M1/135‑1 (MQ=255)

                                                                                                                                       tctaAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  2:148847‑M1/136‑1 (MQ=255)

                                                                                                                                         taAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  2:711469‑M1/124‑1 (MQ=255)

                                                                                                                                         taAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  1:711469‑M1/3‑126 (MQ=255)

                                                                                                                                         tCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGG‑TTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   >  1:652462/1‑140 (MQ=255)

                                                                                                                                          aAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:120542‑M1/126‑1 (MQ=255)

                                                                                                                                          aAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:120542‑M1/2‑127 (MQ=255)

                                                                                                                                           AGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:632356‑M1/126‑1 (MQ=255)

                                                                                                                                           AGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:479375‑M1/1‑126 (MQ=255)

                                                                                                                                           AGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  1:615290‑M1/131‑1 (MQ=255)

CCAATGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATGGCG‑ACATTTGTCTTGA‑TCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362862‑3363140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.